StoreCensus

Billing and invoicing Shopify Apps

Discover the best Billing and invoicing apps for your Shopify store in 2026. Compare features, pricing, and reviews to find the perfect solution.

Looking for the Top Billing and invoicing Apps?

We've analyzed thousands of billing and invoicing apps to identify the top performers based on ratings and install counts.

View Best Billing and invoicing Apps
View all categories

Sync products, orders and payouts into QuickBooks Online to record sales, fees and update inventory. Seamlessly connect your Shopify store to QuickBooks. Know where your money is going. See trends at a glance to help you grow. Seamlessly connect your Shopify store to QuickBooks. Know where your money is going. See trends at a glance to help you grow. more Connect your e-commerce platforms and marketplaces with a quick and easy setup. Track cost of goods and expenses with reports to understand your profitability Payouts are automatically accounted for, giving you peace of mind. Stay on top of cash flow, and understand your revenue to grow your business

2.0(Reviews)

Effortlessly automate ecommerce accounting. Sync data accurately, both ways with QuickBooks. Simplify your ecommerce accounting with our powerful QuickBooks Online integration. Using QB Desktop? Check out our other Shopify app. Seamlessly sync your data with QuickBooks: customers, orders, payments, payouts, purchase orders, products, inventory levels, pricing & more. Tailor to your workflow with features like automap, custom fields and advanced settings. Enjoy quick setup, user-friendly interface, and reliable support! Automating your accounting frees up time to grow your business. Simplify your ecommerce accounting with our powerful QuickBooks Online integration. Using QB Desktop? Check out our other Shopify app. Seamlessly sync your data with QuickBooks: customers, orders, payments, payouts, purchase orders, products, inventory levels, pricing & more. Tailor to your workflow with features like automap, custom fields and advanced settings. Enjoy quick setup, user-friendly interface, and reliable support! Automating your accounting frees up time to grow your business. more Have peace of mind with up-to-date, accurate data in both Shopify and QuickBooks Sync individual orders or summaries, payouts, inventory, purchase orders & more Built for Shopify! Manage the sync directly from within your Shopify store Advanced features like custom field mapping, purchase order syncing, and more Get started in minutes and enjoy amazing, friendly support - and 1:1 setup calls

4.9(Reviews)

Don't stress about the legitimacy of your invoices anymore. pathway got ya. For merchants located in Germany, Austria and Switzerland customers only. The pathway Invoiceprinter Pro automatically creates legally compliant invoices for your customers. With continuous, gapless invoice numbers and the possibility to display international tax rates, mixed baskets of goods or even tips, you are on the safe side. We back up the invoices for you on our platform and retroactive invoice exports can be created for your entire business period. For merchants located in Germany, Austria and Switzerland customers only. The pathway Invoiceprinter Pro automatically creates legally compliant invoices for your customers. With continuous, gapless invoice numbers and the possibility to display international tax rates, mixed baskets of goods or even tips, you are on the safe side. We back up the invoices for you on our platform and retroactive invoice exports can be created for your entire business period. more Legally compliant & automatic invoicing Our team checks your Shopify VAT settings DATEV connection with the pathway Accountingexport Pro > DATEV

4.4(Reviews)

Facturation automatisée conforme France & UE, export factures/avoirs et gestion de TVA. Regulo automatise la création de vos factures et avoirs en conformité avec la réglementation française et européenne pour toutes vos commandes Shopify (en ligne, marketplace ou POS). Gestion des différentes TVA. Prise en compte des remboursements, échanges produits, cartes cadeaux et frais de retour. Factures téléchargeables facilement par vos clients. Export prêt pour votre comptable. Avec Regulo, soyez prêts pour la réforme de facturation électronique 2026 ! Regulo automatise la création de vos factures et avoirs en conformité avec la réglementation française et européenne pour toutes vos commandes Shopify (en ligne, marketplace ou POS). Gestion des différentes TVA. Prise en compte des remboursements, échanges produits, cartes cadeaux et frais de retour. Factures téléchargeables facilement par vos clients. Export prêt pour votre comptable. Avec Regulo, soyez prêts pour la réforme de facturation électronique 2026 ! more Factures et avoirs générés automatiquement Export de factures conforme prêt pour comptabilité Gestion complète des TVA réduites & UE Factures disponibles facilement pour vos clients Adapté à la réforme de la facturation éléctronique 2026

5.0(Reviews)

Create and analyze UNLIMITED advanced REPORTS & ANALYTICS with seamless integration and automation. Report Pundit is the advanced custom reporting tool for Shopify. Generate unlimited custom reports or get instant insights with 150+ prebuilt reports. Analyze order reports, sales reports, tax reports, payout reports, inventory reports, fulfillment reports, customer behavior reports, POS reports and more. Use advanced filters, calculated fields, and custom metrics to refine your reports. Easily integrate with 30+ payment, shipping, and marketing apps to centralize your analytics. Report Pundit is the advanced custom reporting tool for Shopify. Generate unlimited custom reports or get instant insights with 150+ prebuilt reports. Analyze order reports, sales reports, tax reports, payout reports, inventory reports, fulfillment reports, customer behavior reports, POS reports and more. Use advanced filters, calculated fields, and custom metrics to refine your reports. Easily integrate with 30+ payment, shipping, and marketing apps to centralize your analytics. more Better & Advanced Reports: Create, automate, and customize with ease. Complementary Report Service: Let us build your custom reports. Access and review data from tags, metafields, and line-item properties. Multi-Store & Multi-Currency: Consolidate reports across stores and currencies. Export, Automate & Schedule Reports: Excel, CSV, PDF, Slack and Google Sheets

5.0(Reviews)

Integrate with Sage Business Cloud Accounting for a user-friendly e-commerce solution. This integration automatically synchronizes important data between Shopify and Sage Business Cloud Accounting. This saves time, you never have to do duplicate work again and you make fewer mistakes. No more manual work is needed when you use this integration! Synchronizes every 60 minutes. This integration automatically synchronizes important data between Shopify and Sage Business Cloud Accounting. This saves time, you never have to do duplicate work again and you make fewer mistakes. No more manual work is needed when you use this integration! Synchronizes every 60 minutes. more Shopify orders and refunds are transferred to Sage Business Cloud Accounting. Customers in Shopify are created as customers in Sage Business Cloud Accounting. Determine when to synchronise, based on the order status.

1.5(Reviews)

Your automated bookkeeping. Live sync and creation of invoice, credit note and payment data. Save time and manual effort by: Synchronisation of order data, Automatic creation and sending of invoices and credit notes, Automatic creation and sending of refunds, Payments & payment accounts, Dynamic text replacement for invoices and refunds, Historical order import, Multi-account management, DATEV export ready to save receipts and much more... Save time and manual effort by: Synchronisation of order data, Automatic creation and sending of invoices and credit notes, Automatic creation and sending of refunds, Payments & payment accounts, Dynamic text replacement for invoices and refunds, Historical order import, Multi-account management, DATEV export ready to save receipts and much more... more Create orders legally compliant. Synchronisation of invoices & credit notes. Capture tax & payment data incl. automatic emailing. Multiple Shopify shops? Get your Multi-Shop-Owner Discount - just contact us! Assignment per shop of stationery and invoice & credit note layout. Import Shopify invoices & credit notes into sevDesk at a later time.

4.5(Reviews)

Überträgt Bestellungen an sevdesk um Rechnungen, Gutschriften, Zahlungen & Kontakte zu erstellen Führe deine Buchhaltung einfach und rechtskonform, überzeuge mit professionellen E-Rechnungen, erfülle deine Steuerpflichten und behalte dein Business das ganze Jahr im Blick indem du deinen Shop mit sevdesk verbindest. Nach der unkomplizierten Einrichtung erwarten dich zahlreiche Einstellungsmöglichkeiten um die steuerlichen Vorfälle deiner Verkäufe zu automatisieren, deine Belege per E-Mail zu versenden oder in den Shopify Admin und den Kundenbereich deines Shops zu integrieren. Führe deine Buchhaltung einfach und rechtskonform, überzeuge mit professionellen E-Rechnungen, erfülle deine Steuerpflichten und behalte dein Business das ganze Jahr im Blick indem du deinen Shop mit sevdesk verbindest. Nach der unkomplizierten Einrichtung erwarten dich zahlreiche Einstellungsmöglichkeiten um die steuerlichen Vorfälle deiner Verkäufe zu automatisieren, deine Belege per E-Mail zu versenden oder in den Shopify Admin und den Kundenbereich deines Shops zu integrieren. more Automatische Erstellung von E-Rechnungen und Gutschriften zu Bestellungen Übersichtliche Darstellung der erstellten Belege in der Bestellansicht Beleg-Email-Versand oder Einbettung des Rechnungslink in Benachrichtig. & Profil Zahlreiche App-Blöcke & Admin-Aktionen zur nahtlosen Integration in Admin & Shop Unterstützt Basic Tax — deaktiviere Shopify Tax & spare bis zu 0,99€/Bestellung

4.3(Reviews)

The faster, easier, more flexible way to pay business bills Shopify Bill Pay is a complete business payments solution powered by Melio. Easily schedule, pay, and manage all your business payments from the same platform where you run your business. Pay business bills from your Shopify Balance account, debit/credit card, or ACH bank transfer, even if vendors don’t accept that form of payment. They’ll get paid by check or bank transfer. Shopify Bill Pay is a complete business payments solution powered by Melio. Easily schedule, pay, and manage all your business payments from the same platform where you run your business. Pay business bills from your Shopify Balance account, debit/credit card, or ACH bank transfer, even if vendors don’t accept that form of payment. They’ll get paid by check or bank transfer. more Sync to Gmail, Stocky, or QuickBooks Online to instantly populate your account. Set up batch and recurring payments and save hours every billing cycle. Pay with your Shopify Balance account, external bank, or credit/debit card. Sort, filter, and schedule payments from one dedicated dashboard.

2.2(Reviews)

Connect with QuickBooks Desktop. Sales and inventory sync in minutes with Shoplink Integrator! Effortlessly Sync your store with QuickBooks Desktop. Shoplink Integrator makes connecting your store with QuickBooks Desktop easy and reliable. Automatically sync orders - bringing accurate records for customers, inventory, and pricing into your accounting system— without the hassle of manual entry. Designed for growing businesses, Shoplink keeps your accounting accurate and up-to-date, so you can focus on what matters most: running your store. Effortlessly Sync your store with QuickBooks Desktop. Shoplink Integrator makes connecting your store with QuickBooks Desktop easy and reliable. Automatically sync orders - bringing accurate records for customers, inventory, and pricing into your accounting system— without the hassle of manual entry. Designed for growing businesses, Shoplink keeps your accounting accurate and up-to-date, so you can focus on what matters most: running your store. more Instantly sync Shopify sales, inventory, and customers to QuickBooks Desktop Works with QuickBooks Pro, Premier, Enterprise Eliminate manual data entry errors and save hours every week Customize mapping for multiple locations, taxes, and discounts

5.0(Reviews)

StatNexa – Automate, Analyze & Optimize Your Business Operations StatNexa simplifies business management by automating customer communication and generating custom reports. Merchants can track sales, inventory, payouts, and fulfillment data with ease. Scheduled reports ensure timely insights, while multiple export options keep data accessible. With integration across 30+ apps for payments, shipping, and marketing, StatNexa helps businesses stay organized and make data-driven decisions efficiently. StatNexa simplifies business management by automating customer communication and generating custom reports. Merchants can track sales, inventory, payouts, and fulfillment data with ease. Scheduled reports ensure timely insights, while multiple export options keep data accessible. With integration across 30+ apps for payments, shipping, and marketing, StatNexa helps businesses stay organized and make data-driven decisions efficiently. more Custom Reports: Generate sales, tax, and inventory reports. Automated Insights: Schedule reports automatically. Seamless Exports: Download in Excel or CSV. Multi-Store Support: Unified reporting.

0.0(Reviews)

Save time and minimize your administration by creating and sending invoices automatically Connect your Shopify store with SuperFaktúra and automate your invoicing with ease. This integration ensures legally compliant invoices across the EU, Designed for growing B2B and B2C businesses, it creates and sends invoices automatically based on your Shopify orders—saving time and reducing errors. Stay compliant, stay efficient — with the official SuperFaktúra invoicing integration for Shopify. Connect your Shopify store with SuperFaktúra and automate your invoicing with ease. This integration ensures legally compliant invoices across the EU, Designed for growing B2B and B2C businesses, it creates and sends invoices automatically based on your Shopify orders—saving time and reducing errors. Stay compliant, stay efficient — with the official SuperFaktúra invoicing integration for Shopify. more Automatically create and send e-invoices, credit notes, and more Legislation-compliant documents translated into all major languages B2B invoicing & Customer's VAT ID directly on the invoice & OSS handling POS orders are supported Automatic Paid Status Syncing

5.0(Reviews)

Effortlessly sync orders and inventory with QuickBooks using SyncMyCarts seamless integration. SyncMyCart syncs Shopify orders, refunds, and inventory to QuickBooks Online — automatically. No manual data entry, no copy-paste, no mistakes. • Posts orders to QuickBooks as invoices or sales receipts • Syncs refunds, discounts, taxes, shipping, and gift cards • Creates or matches customers and products automatically • Handles split-tender payments • Supports Shopify POS and online orders in one app • Free Onboarding Connect your store, Connect QuickBooks. Configure. Sync. SyncMyCart syncs Shopify orders, refunds, and inventory to QuickBooks Online — automatically. No manual data entry, no copy-paste, no mistakes. • Posts orders to QuickBooks as invoices or sales receipts • Syncs refunds, discounts, taxes, shipping, and gift cards • Creates or matches customers and products automatically • Handles split-tender payments • Supports Shopify POS and online orders in one app • Free Onboarding Connect your store, Connect QuickBooks. Configure. Sync. more Integrate sales data with QuickBooks accounting platforms flawlessly. Automatically import sales data using advanced real time support. Supports multiple tax jurisdictions. Inventory analysis and management. Unattended real time order processing and inventory synchronization.

5.0(Reviews)

Track vendor sales, earnings, and payouts. Built for consignment and multi-vendor stores. VendorPayout helps merchants manage vendor sales, track commission, share vendor dashboards, and simplify payout workflows. It is built for stores with real vendor complexity, especially consignment stores, vintage and resale shops, artist and maker marketplaces, multi-vendor stores, and businesses managing multiple brands or suppliers. If your team is stuck in spreadsheets, payout calculations, and repetitive vendor questions, VendorPayout gives you a cleaner way to run vendor operation. VendorPayout helps merchants manage vendor sales, track commission, share vendor dashboards, and simplify payout workflows. It is built for stores with real vendor complexity, especially consignment stores, vintage and resale shops, artist and maker marketplaces, multi-vendor stores, and businesses managing multiple brands or suppliers. If your team is stuck in spreadsheets, payout calculations, and repetitive vendor questions, VendorPayout gives you a cleaner way to run vendor operation. more Perfect for marketplace stores, consignment shops, artist & makers. Track vendor sales with clear reporting Calculate vendor earnings and commissions Give vendors dashboard access and login visibility Automate payouts as your operation grows

4.7(Reviews)

Automatic consignor tracking tool for consignment businesses. Run your consignment business with less manual work and more control. Automatically track sales and commissions, let consignors submit products for review, and publish directly to Shopify with confidence as you scale. Run your consignment business with less manual work and more control. Automatically track sales and commissions, let consignors submit products for review, and publish directly to Shopify with confidence as you scale. more Automatically track consignor products/variants, sales, and commissions Set dynamic payout and commission rules for any scenario Record and reconcile consignor payouts Give consignors branded access to submit products and view sales and payouts Export detailed reports on consignor sales, commissions, and payouts

4.4(Reviews)

Visma e-conomic Integration: Automatic end-to-end accounting for your store. Streamline your financial operations with the Visma e-conomic integration through automatic synchronization of orders, refunds, products, customers, and inventory between Shopify and e-conomic. Experience automatic accounting of payouts and fees directly from Shopify Payments. Connect your store and automate the real-time transfer of invoices to e-conomic—simplifying processes, reducing manual input, and maintaining accuracy throughout your accounting workflow. Streamline your financial operations with the Visma e-conomic integration through automatic synchronization of orders, refunds, products, customers, and inventory between Shopify and e-conomic. Experience automatic accounting of payouts and fees directly from Shopify Payments. Connect your store and automate the real-time transfer of invoices to e-conomic—simplifying processes, reducing manual input, and maintaining accuracy throughout your accounting workflow. more Effortless e-conomic invoice generation from Shopify orders Automate journal entries in e-conomic for Shopify payouts, fees and refunds Retry failed invoice syncs with one click when errors occur Seamlessly manage your Shopify e-conomic integration from one unified dashboard. Test Run feature to run a demo sync with sample data before going live

4.0(Reviews)

No Bookkeeping Errors with real-time Sync for orders, inventory, payouts & more - QuickBooks Desktop If you're managing Shopify alongside Amazon, eBay, or Walmart and you're still manually entering orders into QuickBooks Desktop, your books are wrong and you know it. Webgility syncs every channel to QuickBooks Desktop automatically. Orders, inventory, payouts, fees, taxes, and reconciliation, all synced in real time, without a single manual entry. Businesses running 3+ channels and 500+ orders a month use Webgility to close their books in hours, not days. If you're managing Shopify alongside Amazon, eBay, or Walmart and you're still manually entering orders into QuickBooks Desktop, your books are wrong and you know it. Webgility syncs every channel to QuickBooks Desktop automatically. Orders, inventory, payouts, fees, taxes, and reconciliation, all synced in real time, without a single manual entry. Businesses running 3+ channels and 500+ orders a month use Webgility to close their books in hours, not days. more Every order, refund & fee posts to QuickBooks — exactly as your accountant needs Match Shopify payouts to QuickBooks automatically — no more reconciliation chaos Zero manual entry into QuickBooks — one fat-finger mistake breaks your whole P&L Sell across Shopify, Amazon & eBay — inventory updates the instant a sale closes POs, net terms & two-way payment sync — B2B and DTC running clean from one place

4.9(Reviews)

Connect your Xero account for easy management of your ecommerce business finances. This integration automatically syncs a daily summary of your Shopify sales with Xero at the end of each day, giving you an accurate view of cash flow and business performance, while allowing you to reconcile your payouts in a timely way. This integration automatically syncs a daily summary of your Shopify sales with Xero at the end of each day, giving you an accurate view of cash flow and business performance, while allowing you to reconcile your payouts in a timely way. more Syncs Shopify sales to Xero daily for timely payout reconciliation Creates a daily summary invoice for preferred payment gateways Group Shopify sales by tax rate to help you manage sales tax (AU/UK/NZ only) Shows sales, discounts, shipping, refunds, gift card, and fees across invoices

1.8(Reviews)

Automatically sync orders, payout summaries, sales, refunds, taxes, fees & more to Xero & QuickBooks Automate your reconciliation process with our Xero & QuickBooks integration. Generate precise invoices for sales, fees, and more directly in Xero or QuickBooks. With Reconcilely, each invoice matches your bank deposits, including fees and refunds—enabling one-click reconciliation in Xero/QuickBooks. Identify profitability with COGS invoices sent to Xero & QuickBooks. Compatible with all payment gateways, customize ledger mappings, invoice references, and sync inventory and contacts. Automate your reconciliation process with our Xero & QuickBooks integration. Generate precise invoices for sales, fees, and more directly in Xero or QuickBooks. With Reconcilely, each invoice matches your bank deposits, including fees and refunds—enabling one-click reconciliation in Xero/QuickBooks. Identify profitability with COGS invoices sent to Xero & QuickBooks. Compatible with all payment gateways, customize ledger mappings, invoice references, and sync inventory and contacts. more Reduce your payout orders down to a single invoice, including taxable sales/fees Send orders to Xero/QuickBooks in real-time from all gateways & currencies Assign custom ledger account mappings based on product types or country groups Automatically organize tax-inclusive/exclusive sales, refunds, gift cards & fees Sync stock, inventory, contacts and apply advanced automations & deductions

4.7(Reviews)

Sync sales data to Xero easily in an automated manner - individual orders or summary sync options Sync sales data to Xero easily in an automated manner - Individual orders OR Summary sync options. With Individual Orders you can export all your Orders, Products & Customer data to Xero Automatically. You can choose to sync your data to Xero automatically or prefer to do it manually at your convenience. With Summary Sync our app will create one invoice for each Payout from Shopify. Also, our app will create one invoice per day for each of the other payment methods. Sync sales data to Xero easily in an automated manner - Individual orders OR Summary sync options. With Individual Orders you can export all your Orders, Products & Customer data to Xero Automatically. You can choose to sync your data to Xero automatically or prefer to do it manually at your convenience. With Summary Sync our app will create one invoice for each Payout from Shopify. Also, our app will create one invoice per day for each of the other payment methods. more Individual Order Sync - Includes Customer, Products, Taxes and All details Summary Invoice Sync - Create Invoice by Payment method for Easy Reconciliation Automated Sync Process throughout the day Very Easy Reconciliation

4.9(Reviews)

Related Categories

About Billing and invoicing Apps for Shopify

Billing and invoicing apps are essential tools for Shopify merchants looking to enhance their store's functionality and improve customer experience. These specialized applications help store owners streamline operations, increase sales, and provide better service to their customers.

When choosing a billing and invoicing app for your Shopify store, consider factors such as features, pricing, customer support, and compatibility with your theme and other apps. Reading reviews from other merchants can also provide valuable insights into the app's performance and reliability.

The apps listed on this page represent some of the best billing and invoicing solutions available in the Shopify App Store. Each has been selected based on its functionality, user ratings, and overall value for Shopify merchants.