Effortlessly automate ecommerce accounting. Sync data accurately, both ways with QuickBooks Online. Simplify your ecommerce accounting with our powerful QuickBooks Online integration. Using QB Desktop or Xero? See our other Shopify apps. Seamlessly sync your data with QuickBooks: customers, orders, payments, payouts, purchase orders, products, inventory levels, pricing & more. Tailor to your workflow with features like automap, custom fields and advanced settings. Enjoy quick setup, user-friendly interface, and reliable support! Automating your accounting frees up time to grow your business. Simplify your ecommerce accounting with our powerful QuickBooks Online integration. Using QB Desktop or Xero? See our other Shopify apps. Seamlessly sync your data with QuickBooks: customers, orders, payments, payouts, purchase orders, products, inventory levels, pricing & more. Tailor to your workflow with features like automap, custom fields and advanced settings. Enjoy quick setup, user-friendly interface, and reliable support! Automating your accounting frees up time to grow your business. more Have peace of mind with up-to-date, accurate data in both Shopify and QuickBooks Sync individual orders or summaries, payouts, inventory, purchase orders & more Built for Shopify! Manage the sync directly from within your Shopify store Advanced features like custom field mapping, purchase order syncing, and more Get started in minutes and enjoy amazing, friendly support - and 1:1 setup calls
Billing and invoicing Shopify Apps
Discover the best Billing and invoicing apps for your Shopify store in 2026. Compare features, pricing, and reviews to find the perfect solution.
Looking for the Top Billing and invoicing Apps?
We've analyzed thousands of billing and invoicing apps to identify the top performers based on ratings and install counts.
View Best Billing and invoicing AppsKoppel met Nmbrs Accounting (Yuki) voor een gebruiksvriendelijke e-commerce oplossing. Deze koppeling wisselt automatisch belangrijke gegevens uit tussen Shopify en Nmbrs Accounting (Yuki). Dit bespaart tijd, je hoeft nooit meer dubbel werk te verrichten én je maakt minder fouten. Er is immers geen handwerk meer nodig. Deze koppeling wisselt automatisch belangrijke gegevens uit tussen Shopify en Nmbrs Accounting (Yuki). Dit bespaart tijd, je hoeft nooit meer dubbel werk te verrichten én je maakt minder fouten. Er is immers geen handwerk meer nodig. more Synchroniseer moeiteloos orders en refunds tussen Shopify en Nmbrs Accounting. Klanten in Shopify worden aangemaakt als klant in Nmbrs Accounting (Yuki). Bepaal op basis van de orderstatus wanneer er gesynchroniseerd moet worden.
Qoyod Connector, comply with ZATCA (Fatoorah) Phase 2 by automating invoices and showing QR codes. With just a few simple steps, shop owners can easily connect their Shopify stores to Qoyod, allowing for automatic creation of products, customers, and invoices in Qoyod. This helps store owners stay compliant with the new Zakat e-invoicing regulations with no complex steps involved. With just a few simple steps, shop owners can easily connect their Shopify stores to Qoyod, allowing for automatic creation of products, customers, and invoices in Qoyod. This helps store owners stay compliant with the new Zakat e-invoicing regulations with no complex steps involved. more Easy integration with Qoyod, Works with Online Store and POS Automatic creation of customers, products and invoices in Qoyod Show Phase 2 QR Code to customer emails to be compliance with ZATCA Fatoorah
Easily create a quote from a cart contents or a single product! With Qteedy you can allow your customers to create a quote in your Shopify store instead of making an order. Quotes can be created on cart page or product page. You can adjust price for every particular customer and then turn a quote into an order automatically. Qteedy can create a Shopify order in your store after you sent a quote. But it will not if you don't need to! You could change Quote look and feel to match your store's design. With Qteedy you can allow your customers to create a quote in your Shopify store instead of making an order. Quotes can be created on cart page or product page. You can adjust price for every particular customer and then turn a quote into an order automatically. Qteedy can create a Shopify order in your store after you sent a quote. But it will not if you don't need to! You could change Quote look and feel to match your store's design. more Easily integrates in every Shopify theme Customer creates a quote with one single click Qteedy can create a new order when quote has been processed Every quote could be tuned up to your needs Flexible templating for a quote
Automated Sales Sync to QuickBooks Online & Intuit Enterprise Suite – Individual Order or Summary Simplify your Shopify accounting and reconciliation with a flexible sync solution designed for your business. Individual Order Sync lets you export Orders, Products, Customers, Taxes, and other order details to QuickBooks Online or Intuit Enterprise Suite, either automatically or manually at your convenience. Summary Sync provides an easier way to reconcile payments by creating one entry for each Shopify payout and one daily summary entry for other payment methods. Simplify your Shopify accounting and reconciliation with a flexible sync solution designed for your business. Individual Order Sync lets you export Orders, Products, Customers, Taxes, and other order details to QuickBooks Online or Intuit Enterprise Suite, either automatically or manually at your convenience. Summary Sync provides an easier way to reconcile payments by creating one entry for each Shopify payout and one daily summary entry for other payment methods. more Sync Shopify sales data to QuickBooks Online and Intuit Enterprise Suite Individual Order Sync with Customers, Products, Taxes, and order details Summary Sync for easier payment and payout reconciliation Automated or manual sync options Easy reconciliation of Shopify sales and payments
Sync sales to QuickBooks Desktop in an automated manner - Sync individual orders Sync sales data to QuickBooks Desktop or Enterprise editions easily in an automated manner - Sync Individual orders With Individual Orders you can export all your Orders, Products & Customer data to QuickBooks Automatically. You can sync data to QuickBooks automatically or prefer to do it manually at your convenience. Summary Sync: With Summary Sync our app will create one entry for each Payout from Shopify and one entry per day for each of the other payment methods. Sync sales data to QuickBooks Desktop or Enterprise editions easily in an automated manner - Sync Individual orders With Individual Orders you can export all your Orders, Products & Customer data to QuickBooks Automatically. You can sync data to QuickBooks automatically or prefer to do it manually at your convenience. Summary Sync: With Summary Sync our app will create one entry for each Payout from Shopify and one entry per day for each of the other payment methods. more Individual Order Sync - Includes Customer, Products, Taxes and All details Automated Sync Process Very Easy Reconciliation Summary Invoice Sync - Sync Daily Summary or Settlement Summary
Imports your orders, POS, refunds, customers, payment fees and products seamlessly into QuickBooks Connect Shopify to QuickBooks Online and keep your accounts up to date automatically. Import orders as invoices, create or match customers and items, apply payments, handle refunds/credit notes, transaction fees, discounts and worldwide tax including US/Canada sales tax, GST and VAT. Supports multiple Shopify stores, multi-currency and configurable mapping. Connect Shopify to QuickBooks Online and keep your accounts up to date automatically. Import orders as invoices, create or match customers and items, apply payments, handle refunds/credit notes, transaction fees, discounts and worldwide tax including US/Canada sales tax, GST and VAT. Supports multiple Shopify stores, multi-currency and configurable mapping. more Import orders, POS sales and sales from other channels as QuickBooks Invoices Import payments and payment transaction fees Import refunds/returns as QuickBooks Credit Notes Multi-currency support Compatible with QuickBooks Tax Automation for US businesses
Accurate accounting for retail and B2B sales, payments, and product details. QuickBooks provides accounting software for Shopify retail and B2B merchants that brings sales activity, payments, customers, and product details into one centralized place for smoother bookkeeping and easier oversight. Categories are mapped for you to reduce manual entry and help keep your books accurate as you sell and your shop evolves. Connect your store at no extra cost — the connector is included with your QuickBooks subscription. QuickBooks provides accounting software for Shopify retail and B2B merchants that brings sales activity, payments, customers, and product details into one centralized place for smoother bookkeeping and easier oversight. Categories are mapped for you to reduce manual entry and help keep your books accurate as you sell and your shop evolves. Connect your store at no extra cost — the connector is included with your QuickBooks subscription. more Save time with sales, taxes, and fees mapped to the right categories Record B2B orders as invoices, with customer and product details aligned Track inventory smarter with quantities and costs kept in sync as you sell Stay on top of cash flow across retail and B2B sales and other channels
Sync products, orders and payouts into QuickBooks Online to record sales, fees and update inventory. Seamlessly connect your Shopify store to QuickBooks. Know where your money is going. See trends at a glance to help you grow. Seamlessly connect your Shopify store to QuickBooks. Know where your money is going. See trends at a glance to help you grow. more Connect your e-commerce platforms and marketplaces with a quick and easy setup. Track cost of goods and expenses with reports to understand your profitability Payouts are automatically accounted for, giving you peace of mind. Stay on top of cash flow, and understand your revenue to grow your business
Don't stress about the legitimacy of your invoices anymore. pathway got ya. For merchants located in Germany, Austria and Switzerland customers only. The pathway Invoiceprinter Pro automatically creates legally compliant invoices for your customers. With continuous, gapless invoice numbers and the possibility to display international tax rates, mixed baskets of goods or even tips, you are on the safe side. We back up the invoices for you on our platform and retroactive invoice exports can be created for your entire business period. For merchants located in Germany, Austria and Switzerland customers only. The pathway Invoiceprinter Pro automatically creates legally compliant invoices for your customers. With continuous, gapless invoice numbers and the possibility to display international tax rates, mixed baskets of goods or even tips, you are on the safe side. We back up the invoices for you on our platform and retroactive invoice exports can be created for your entire business period. more Legally compliant & automatic invoicing Our team checks your Shopify VAT settings DATEV connection with the pathway Accountingexport Pro > DATEV
This app transfers your orders automatically every single day. Save time and avoid errors. This app connects your Shopify webshop to your Reeleezee administration. That’s why you don’t have to manually type out data, the orders are transferred automatically to Reeleezee. This is a real-time connection. You indicate when a Shopify order is transferred: When it is created, paid or partially paid. The correct price-details (e.g. order details) and customer-details are transferred to Reeleezee. All details can be found at https://www.webwinkelfacturen.nl/handleiding-shopify-reeleezee. This app connects your Shopify webshop to your Reeleezee administration. That’s why you don’t have to manually type out data, the orders are transferred automatically to Reeleezee. This is a real-time connection. You indicate when a Shopify order is transferred: When it is created, paid or partially paid. The correct price-details (e.g. order details) and customer-details are transferred to Reeleezee. All details can be found at https://www.webwinkelfacturen.nl/handleiding-shopify-reeleezee. more Transfer your orders automatically into Reeleezee. This saves time and cost. The taxes and ledgercodes are assigned correctly in Reeleezee, avoiding errors. You don’t have to type data in Reeleezee and your webshop, so no double entry. Connect Shopify with your Reeleezee software within 5 minutes!
Automatic invoices, credit notes & Factur-X. FEC export, FR & EU VAT, ready for the French reform. Regulo automatically generates compliant invoices and credit notes for all your Shopify orders: online store, marketplaces and POS. French and EU VAT, reduced rates, refunds, exchanges, gift cards and return fees are all handled. Your customers download their invoices from their email or their account. FEC export (French tax audit file) in Excel, ready for your accountant (Pennylane, Sage, Cegid...). French e-invoicing is becoming mandatory: your invoices are already in Factur-X format. Regulo automatically generates compliant invoices and credit notes for all your Shopify orders: online store, marketplaces and POS. French and EU VAT, reduced rates, refunds, exchanges, gift cards and return fees are all handled. Your customers download their invoices from their email or their account. FEC export (French tax audit file) in Excel, ready for your accountant (Pennylane, Sage, Cegid...). French e-invoicing is becoming mandatory: your invoices are already in Factur-X format. more Automatic invoices and credit notes: online store, marketplaces and POS Factur-X invoices, ready for mandatory French e-invoicing Compliant FEC accounting export (Excel), ready for your accountant French & EU VAT, reduced rates, returns and gift cards handled Customers get their invoices by email and in their account
Build custom reports, automate reports & analytics, and reconcile data from key integrations easily Report Pundit is an advanced custom reports and analytics tool for your store. Generate custom reports & dashboards from 150 pre-built sales, payout, profit, customer, markets, POS, refund report, tax reports, inventory reports, fulfillment reports, financial reports, accounting reports & multi-currency. Refine with filters, calculated columns, custom metrics, & custom API fields. Pull data from metafields, tags, & line items. Export, schedule, & share to Excel, CSV, PDF, Slack, & Google Sheets. Report Pundit is an advanced custom reports and analytics tool for your store. Generate custom reports & dashboards from 150 pre-built sales, payout, profit, customer, markets, POS, refund report, tax reports, inventory reports, fulfillment reports, financial reports, accounting reports & multi-currency. Refine with filters, calculated columns, custom metrics, & custom API fields. Pull data from metafields, tags, & line items. Export, schedule, & share to Excel, CSV, PDF, Slack, & Google Sheets. more Better Reports & Advanced Reports: Automated custom email reports and save hours AI Insights & Analytics via MCP: Analyze Shopify data in Claude & ChatGPT Access data from tags, metafields, line-item properties & payout reconciliation Multi-Store Reports: Get one view of sales across stores, Markets & currencies Export, Automate & Email/Schedule Reports: Excel, CSV, PDF, Slack & Google Sheet
Custom reports & analytics for sales, inventory, orders & customers. Schedule, export & share. Report Toaster is a powerful reporting & analytics app for Shopify merchants. Access realtime data to create, schedule and export reports across all of your shops. All reports are fully customizable, so you can create your own custom reports with customized charts for presentations, or we'll do it for you. Best of all, use our AI report builder to easily create any report. Create calculated fields to track inventory history, setup an aging report, or get data from tags or metafields. Report Toaster is a powerful reporting & analytics app for Shopify merchants. Access realtime data to create, schedule and export reports across all of your shops. All reports are fully customizable, so you can create your own custom reports with customized charts for presentations, or we'll do it for you. Best of all, use our AI report builder to easily create any report. Create calculated fields to track inventory history, setup an aging report, or get data from tags or metafields. more Start with one of our 150+ reports, then customize and save better reports Export and download reports as PDF or CSV to share via email or analyze in Excel Scheduled reports for automated delivery via email, SMS or Slack Share live sales report and inventory report links with staff or third-parties Use multi-store reporting to report and compare data from multiple shops
Send orders, refunds and customers to Sage Accounting automatically. Stop retyping sales. Combidesk connects your Shopify store to Sage Accounting. Orders are booked as sales invoices or sales entries, refunds as credit notes, and new buyers are added as Sage customers. You decide whether to sync all orders or only paid ones, which ledger account sales are booked on and which bank account receives payments. Shopify tax rates are matched to your Sage VAT rates. Standard syncs every 60 minutes, Pro and Premium sync almost in real time. Combidesk connects your Shopify store to Sage Accounting. Orders are booked as sales invoices or sales entries, refunds as credit notes, and new buyers are added as Sage customers. You decide whether to sync all orders or only paid ones, which ledger account sales are booked on and which bank account receives payments. Shopify tax rates are matched to your Sage VAT rates. Standard syncs every 60 minutes, Pro and Premium sync almost in real time. more Book Shopify orders in Sage as sales invoices or sales entries Refunds are added as credit notes, so revenue and VAT stay correct New Shopify buyers are created as customers in Sage automatically Choose to sync all or only paid orders, your ledger and your bank account Book Shopify Payments payouts in Sage for easier bank reconciliation
Profit analytics, calculator & tracker. Monitor key metrics, margins and real-time performance. Shopify shows revenue, Setpilot monitors your real profit. Sync your COGS, shipping, ads, and fees into our profit analytics, calculator & tracker. Get precise metrics on margins, net profit, and contribution margin breakdowns. Setpilot syncs Shopify sales and products to automate your unit economics and ROI tracking. See exactly where profit is made or lost with actionable business intelligence and customer segmentation—not just another dashboard. Shopify shows revenue, Setpilot monitors your real profit. Sync your COGS, shipping, ads, and fees into our profit analytics, calculator & tracker. Get precise metrics on margins, net profit, and contribution margin breakdowns. Setpilot syncs Shopify sales and products to automate your unit economics and ROI tracking. See exactly where profit is made or lost with actionable business intelligence and customer segmentation—not just another dashboard. more Profit analytics, calculator & tracker. Monitor real metrics and true margins. Sync COGS, shipping, ads and fees to automate your unit economics and ROI. Get precise metrics on net profit and contribution margin breakdowns. Understand your customer base — segment by profitability and loyalty. Actionable business intelligence — see exactly where profit is made or lost.
Your automated bookkeeping. Live sync and creation of invoice, credit note and payment data. Save time and manual effort by: Synchronisation of order data, Automatic creation and sending of invoices and credit notes, Automatic creation and sending of refunds, Payments & payment accounts, Dynamic text replacement for invoices and refunds, Historical order import, Multi-account management, DATEV export ready to save receipts and much more... Save time and manual effort by: Synchronisation of order data, Automatic creation and sending of invoices and credit notes, Automatic creation and sending of refunds, Payments & payment accounts, Dynamic text replacement for invoices and refunds, Historical order import, Multi-account management, DATEV export ready to save receipts and much more... more Create orders legally compliant. Synchronisation of invoices & credit notes. Capture tax & payment data incl. automatic emailing. Assignment per shop of stationery and invoice & credit note layout. Import Shopify invoices & credit notes into sevDesk at a later time.
Automatisiere deine Buchhaltung in sevdesk: Rechnungen, Gutschriften, Aufträge und Zahlungen. Führe deine Buchhaltung einfach und rechtskonform, überzeuge mit professionellen E-Rechnungen, erfülle deine Steuerpflichten und behalte dein Business das ganze Jahr im Blick indem du deinen Shop mit sevdesk verbindest. Erstelle Rechnungen, Gutschriften, Angebote, Auftragsbestätigungen und Lieferscheine. Synchronisiere Kontakte und Zahlungen. Bestimme flexibel, wann und wie Dokumente entstehen. Versende Belege per E-Mail und füge Rechnungslinks in Benachrichtigungen sowie in Kundenkonten ein. Führe deine Buchhaltung einfach und rechtskonform, überzeuge mit professionellen E-Rechnungen, erfülle deine Steuerpflichten und behalte dein Business das ganze Jahr im Blick indem du deinen Shop mit sevdesk verbindest. Erstelle Rechnungen, Gutschriften, Angebote, Auftragsbestätigungen und Lieferscheine. Synchronisiere Kontakte und Zahlungen. Bestimme flexibel, wann und wie Dokumente entstehen. Versende Belege per E-Mail und füge Rechnungslinks in Benachrichtigungen sowie in Kundenkonten ein. more Automatische Erstellung von E-Rechnungen und Gutschriften zu Bestellungen Angebote, Auftragsbestätigungen und Lieferscheine automatisch erstellen Belege per E-Mail senden und Rechnungslinks im Kundenkonto bereitstellen Importierte PayPal-Zahlungen automatisch Belegen zuordnen Direkt in deine Abläufe integriert: Admin-Blöcke, Flow- & Sidekick-Kompatibel
Shine Ecommerce automates invoicing and bookkeeping for e-commerce businesses. Shine Ecommerce is designed for both small and large webshops that want to automate away the tedious accounting tasks. We deliver accurate, reliable, and fully automated bookkeeping. Our bookkeeping gives you confidence and a clear overview of your finances, allowing you to grow your business on a solid foundation. With automated accounting processes, you can focus on growth-driving activities such as increasing sales, finding the right products, or marketing instead. Shine Ecommerce is designed for both small and large webshops that want to automate away the tedious accounting tasks. We deliver accurate, reliable, and fully automated bookkeeping. Our bookkeeping gives you confidence and a clear overview of your finances, allowing you to grow your business on a solid foundation. With automated accounting processes, you can focus on growth-driving activities such as increasing sales, finding the right products, or marketing instead. more Automated bookkeeping of orders, payments, fees, gift cards, and deposits. Automatic reconciliation reports. A single login for all your webshops. Real-time overview of orders, payments, fees, gift cards, and deposits. Supports B2B, B2C, and B2G invoicing, including the creation of EAN invoices.
The faster, easier, more flexible way to pay business bills Shopify Bill Pay is a complete business payments solution powered by Melio. Easily schedule, pay, and manage all your business payments from the same platform where you run your business. Pay business bills from your Shopify Balance account, debit/credit card, or ACH bank transfer, even if vendors don’t accept that form of payment. They’ll get paid by check or bank transfer. Shopify Bill Pay is a complete business payments solution powered by Melio. Easily schedule, pay, and manage all your business payments from the same platform where you run your business. Pay business bills from your Shopify Balance account, debit/credit card, or ACH bank transfer, even if vendors don’t accept that form of payment. They’ll get paid by check or bank transfer. more Sync to Gmail, Stocky, or QuickBooks Online to instantly populate your account. Set up batch and recurring payments and save hours every billing cycle. Pay with your Shopify Balance account, external bank, or credit/debit card. Sort, filter, and schedule payments from one dedicated dashboard.
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About Billing and invoicing Apps for Shopify
Billing and invoicing apps are essential tools for Shopify merchants looking to enhance their store's functionality and improve customer experience. These specialized applications help store owners streamline operations, increase sales, and provide better service to their customers.
When choosing a billing and invoicing app for your Shopify store, consider factors such as features, pricing, customer support, and compatibility with your theme and other apps. Reading reviews from other merchants can also provide valuable insights into the app's performance and reliability.
The apps listed on this page represent some of the best billing and invoicing solutions available in the Shopify App Store. Each has been selected based on its functionality, user ratings, and overall value for Shopify merchants.