Connect with QuickBooks Desktop. Sales and inventory sync in minutes with Shoplink Integrator! Effortlessly Sync your store with QuickBooks Desktop. Shoplink Integrator makes connecting your store with QuickBooks Desktop easy and reliable. Automatically sync orders, refunds, and inventory - bringing accurate records for customers, inventory, and pricing into your accounting system— without the hassle of manual entry. Designed for growing businesses, Shoplink keeps your accounting accurate and up-to-date, so you can focus on what matters most: running your store. Effortlessly Sync your store with QuickBooks Desktop. Shoplink Integrator makes connecting your store with QuickBooks Desktop easy and reliable. Automatically sync orders, refunds, and inventory - bringing accurate records for customers, inventory, and pricing into your accounting system— without the hassle of manual entry. Designed for growing businesses, Shoplink keeps your accounting accurate and up-to-date, so you can focus on what matters most: running your store. more Instantly sync Sales, Refunds, Inventory, and customers to QuickBooks Desktop Works with QuickBooks Pro, Premier, Enterprise Eliminate manual data entry errors and save hours every week Customize mapping for multiple locations, taxes, and discounts Create Credit Memos for previously posted sales as refunds occur
Billing and invoicing Shopify Apps
Discover the best Billing and invoicing apps for your Shopify store in 2026. Compare features, pricing, and reviews to find the perfect solution.
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StatNexa – Automate, Analyze & Optimize Your Business Operations StatNexa simplifies business management by automating customer communication and generating custom reports. Merchants can track sales, inventory, payouts, and fulfillment data with ease. Scheduled reports ensure timely insights, while multiple export options keep data accessible. With integration across 30+ apps for payments, shipping, and marketing, StatNexa helps businesses stay organized and make data-driven decisions efficiently. StatNexa simplifies business management by automating customer communication and generating custom reports. Merchants can track sales, inventory, payouts, and fulfillment data with ease. Scheduled reports ensure timely insights, while multiple export options keep data accessible. With integration across 30+ apps for payments, shipping, and marketing, StatNexa helps businesses stay organized and make data-driven decisions efficiently. more Custom Reports: Generate sales, tax, and inventory reports. Automated Insights: Schedule reports automatically. Seamless Exports: Download in Excel or CSV. Multi-Store Support: Unified reporting.
Automated SuperFaktúra invoicing, built by ecommerce invoicing experts. Less admin, fewer errors. Connect your Shopify store with SuperFaktúra and automate your invoicing with ease. This integration ensures legally compliant invoices across the EU, Designed for growing B2B and B2C businesses, it creates and sends invoices automatically based on your Shopify orders—saving time and reducing errors. Stay compliant, stay efficient — with the native SuperFaktúra invoicing integration for Shopify. Connect your Shopify store with SuperFaktúra and automate your invoicing with ease. This integration ensures legally compliant invoices across the EU, Designed for growing B2B and B2C businesses, it creates and sends invoices automatically based on your Shopify orders—saving time and reducing errors. Stay compliant, stay efficient — with the native SuperFaktúra invoicing integration for Shopify. more Automatically create and send e-invoices, credit notes, and more Legislation-compliant documents translated into all major languages B2B invoicing & Customer's VAT ID directly on the invoice & OSS handling Direct integration — no Zapier, no middleware, no third-party connectors Automatic Paid Status Syncing
Post orders to QuickBooks Online in just a few clicks — free, unlimited orders on our free plan. Approve first, verify after. SyncMyCart shows you the exact sales receipt or invoice it will write to QuickBooks Online — products, shipping, taxes and discounts broken out, line by line — and posts nothing until you approve it. Refunds follow the order they came from. Customers are matched, never duplicated. Once posted, SyncMyCart reads QuickBooks back so you can confirm what landed and catch what doesn't match your store. Broken automation shows up at close. Catch it before you post. Approve first, verify after. SyncMyCart shows you the exact sales receipt or invoice it will write to QuickBooks Online — products, shipping, taxes and discounts broken out, line by line — and posts nothing until you approve it. Refunds follow the order they came from. Customers are matched, never duplicated. Once posted, SyncMyCart reads QuickBooks back so you can confirm what landed and catch what doesn't match your store. Broken automation shows up at close. Catch it before you post. more Preview every order against QuickBooks before a single line is written Post as itemized receipts or invoices — products, shipping, tax, discounts Refunds, gift cards and split-tender payments post with the order they belong to SyncMyCart provides posting confirmation tools and analysis Post by payout so your bank reconciliation matches your deposits
Start your online store in Bulgaria fast. Instantly add digital receipts and XML auditing. Take a NAP is a valuable tool for those looking to kickstart an online store in Bulgaria. It provides everything needed to comply with the requirements of the Bulgarian National Revenue Agency. It also lessens the configuration and minimizes all the efforts. The interface is friendly and easy-to-use. Take a NAP is a valuable tool for those looking to kickstart an online store in Bulgaria. It provides everything needed to comply with the requirements of the Bulgarian National Revenue Agency. It also lessens the configuration and minimizes all the efforts. The interface is friendly and easy-to-use. more Audit XML File Generation Digital Receipts to Customers Supports Shopify Payments, Stripe, PayPal, Cash on Delivery and more Automatic Currency Conversion at the rates of the Bulgarian National Bank (BNB) Tax Group Selection & Support for Shopify Taxes and Duties
Consignment & Vendor Tracking. Track sales, earnings, and payouts in one place. VendorPayout helps merchants manage vendor sales, track commission, share vendor dashboards, and simplify payout workflows. It is built for stores with real vendor complexity, especially consignment stores, vintage and resale shops, artist and maker marketplaces, multi-vendor stores, and businesses managing multiple brands or suppliers. If your team is stuck in spreadsheets, payout calculations, and repetitive vendor questions, VendorPayout gives you a cleaner way to run vendor operation. VendorPayout helps merchants manage vendor sales, track commission, share vendor dashboards, and simplify payout workflows. It is built for stores with real vendor complexity, especially consignment stores, vintage and resale shops, artist and maker marketplaces, multi-vendor stores, and businesses managing multiple brands or suppliers. If your team is stuck in spreadsheets, payout calculations, and repetitive vendor questions, VendorPayout gives you a cleaner way to run vendor operation. more Perfect for marketplace stores, consignment shops, artist & makers. Track vendor sales with clear reporting Calculate vendor earnings and commissions Give vendors dashboard access and login visibility Automate payouts as your operation grows
Automatic consignor tracking tool for consignment businesses. Run your consignment business with less manual work and more control. Automatically track sales and commissions, let consignors submit products for review, and publish directly to Shopify with confidence as you scale. Run your consignment business with less manual work and more control. Automatically track sales and commissions, let consignors submit products for review, and publish directly to Shopify with confidence as you scale. more Automatically track consignor products/variants, sales, and commissions Set dynamic payout and commission rules for any scenario Record and reconcile consignor payouts Give consignors branded access to submit products and view sales and payouts Export detailed reports on consignor sales, commissions, and payouts
Close your books without opening e-conomic. Every order, fee, and payout posts automatically. Manual bookkeeping in e-conomic ends here. Every Shopify order, refund, product, and customer syncs automatically — you decide how sales post. Individual Invoice Mode books one e-conomic invoice per order with full line items, for detailed reporting. Sales Summary Mode posts one daily journal entry per payment method, each with its own revenue and clearing accounts, keeping your ledger clean at any volume. Payments, fees, and payouts book automatically — reconciliation takes care of itself. Manual bookkeeping in e-conomic ends here. Every Shopify order, refund, product, and customer syncs automatically — you decide how sales post. Individual Invoice Mode books one e-conomic invoice per order with full line items, for detailed reporting. Sales Summary Mode posts one daily journal entry per payment method, each with its own revenue and clearing accounts, keeping your ledger clean at any volume. Payments, fees, and payouts book automatically — reconciliation takes care of itself. more Individual Order Mode creates one e-conomic invoice per order with line items Sales Summary Mode groups sales into periodic summaries for a clean ledger Automated bookkeeping for Shopify payments, fees, payouts, and refunds Point of Sale orders sync automatically, even with no customer attached Validate with Test Run before going live, or replay failed syncs in one click
No Bookkeeping Errors with real-time Sync for orders, inventory, payouts & more - QuickBooks Desktop If you're managing Shopify alongside Amazon, eBay, or Walmart and you're still manually entering orders into QuickBooks Desktop, your books are wrong and you know it. Webgility syncs every channel to QuickBooks Desktop automatically. Orders, inventory, payouts, fees, taxes, and reconciliation, all synced in real time, without a single manual entry. Businesses running 3+ channels and 500+ orders a month use Webgility to close their books in hours, not days. If you're managing Shopify alongside Amazon, eBay, or Walmart and you're still manually entering orders into QuickBooks Desktop, your books are wrong and you know it. Webgility syncs every channel to QuickBooks Desktop automatically. Orders, inventory, payouts, fees, taxes, and reconciliation, all synced in real time, without a single manual entry. Businesses running 3+ channels and 500+ orders a month use Webgility to close their books in hours, not days. more Every order, refund & fee posts to QuickBooks : exactly as your accountant needs Match Shopify payouts to QuickBooks automatically : no more reconciliation chaos Zero manual entry into QuickBooks : one fat-finger mistake breaks your whole P&L Sell across Shopify, Amazon & eBay : inventory updates the instant a sale closes POs, net terms & two-way payment sync : B2B and DTC running clean from one place
Generate Branded Invoices with your Store Logo, Legal name, Address and Support contact number. The app lets you send professional, clean invoice PDFs to your customers. Choose from multiple invoice templates in the settings and customize them with your branding, including logo and authorized signature. Easily generate credit notes, shipping labels, delivery notes, and packing slips. You can also bulk download invoices for faster management. The app lets you send professional, clean invoice PDFs to your customers. Choose from multiple invoice templates in the settings and customize them with your branding, including logo and authorized signature. Easily generate credit notes, shipping labels, delivery notes, and packing slips. You can also bulk download invoices for faster management. more Automated Branded Invoicing for all Shopify orders. E-Invoices XML for UBL 2.1/PEPPOL BIS 3.0/CII D16B/Factur-X 1.0/ZUGFeRD 2.0. Editable Shipping Labels – Choose from Multiple Templates Multi Shipping Carriers Integration Bulk Download & Comprehensive Tax Reports
Financial visibility, instantly! Not end of day / next week summary. Accurate QuickBooks accounting Decisions aren't made on stale data. Batched summary journals hide issues causing end-of-month closing books. WeIntegrate Shopify QuickBooks connector instantly creates real Sales Receipts / Invoices with line-item accuracy & Shopify Payouts automatically reconciled as QuickBooks Online (QBO) bank deposits linked to real QBO documents. Customers, products, inventory, taxes & tax nexus, fees, tips, RDF, COGS, refunds flow seamlessly. Balance Sheet, P&L, A/R, and inventory reports always current. Decisions aren't made on stale data. Batched summary journals hide issues causing end-of-month closing books. WeIntegrate Shopify QuickBooks connector instantly creates real Sales Receipts / Invoices with line-item accuracy & Shopify Payouts automatically reconciled as QuickBooks Online (QBO) bank deposits linked to real QBO documents. Customers, products, inventory, taxes & tax nexus, fees, tips, RDF, COGS, refunds flow seamlessly. Balance Sheet, P&L, A/R, and inventory reports always current. more Sales, fulfillments, refunds instantly sync as QuickBooks Online transactions Payouts automatically created as real reconciled QBO Deposit — not journal entry Penny accurate sales tax integration, physical and economic sales tax nexus Integrate POS, web, and draft orders into QBO from a single WeIntegrate account Gift cards, tips, fees and inventory instantly up-to-date without delay in QBO
Sales reconciliation made easy Connect Shopify and Xero to automate data between your store and your books. Sync a daily summary of sales and payments to keep your ledger lean, or sync individual orders for granular tracking of customer details and inventory. Automatically match Shopify payouts with your Xero bank feeds to reconcile fees, refunds, and taxes in just a few clicks. Connect Shopify and Xero to automate data between your store and your books. Sync a daily summary of sales and payments to keep your ledger lean, or sync individual orders for granular tracking of customer details and inventory. Automatically match Shopify payouts with your Xero bank feeds to reconcile fees, refunds, and taxes in just a few clicks. more Save time with flexible syncing: Daily summaries or per-sale details. Fast reconciliation: Auto-match fees, refunds, and taxes. Sync up to 90 days of historical data to get your books up to date instantly
Automatically sync orders, payout summaries, sales, refunds, taxes, fees & more to Xero & QuickBooks Automate your reconciliation process with our Xero & QuickBooks integration. Generate precise invoices for sales, fees, and more directly in Xero or QuickBooks. With Reconcilely, each invoice matches your bank deposits, including fees and refunds—enabling one-click reconciliation in Xero/QuickBooks. Identify profitability with COGS invoices sent to Xero & QuickBooks. Compatible with all payment gateways, customize ledger mappings, invoice references, and sync inventory and contacts. Automate your reconciliation process with our Xero & QuickBooks integration. Generate precise invoices for sales, fees, and more directly in Xero or QuickBooks. With Reconcilely, each invoice matches your bank deposits, including fees and refunds—enabling one-click reconciliation in Xero/QuickBooks. Identify profitability with COGS invoices sent to Xero & QuickBooks. Compatible with all payment gateways, customize ledger mappings, invoice references, and sync inventory and contacts. more Reduce your payout orders down to a single invoice, including taxable sales/fees Send orders to Xero/QuickBooks in real-time from all gateways & currencies Assign custom ledger account mappings based on product types or country groups Automatically organize tax-inclusive/exclusive sales, refunds, gift cards & fees Sync stock, inventory, contacts and apply advanced automations & deductions
Sync sales data to Xero easily in an automated manner - individual orders or summary sync options Sync sales data to Xero easily in an automated manner - Individual orders OR Summary sync options. With Individual Orders you can export all your Orders, Products & Customer data to Xero Automatically. You can choose to sync your data to Xero automatically or prefer to do it manually at your convenience. With Summary Sync our app will create one invoice for each Payout from Shopify. Also, our app will create one invoice per day for each of the other payment methods. Sync sales data to Xero easily in an automated manner - Individual orders OR Summary sync options. With Individual Orders you can export all your Orders, Products & Customer data to Xero Automatically. You can choose to sync your data to Xero automatically or prefer to do it manually at your convenience. With Summary Sync our app will create one invoice for each Payout from Shopify. Also, our app will create one invoice per day for each of the other payment methods. more Individual Order Sync - Includes Customer, Products, Taxes and All details Summary Invoice Sync - Create Invoice by Payment method for Easy Reconciliation Automated Sync Process throughout the day Very Easy Reconciliation
Automatically sync orders, refunds, fees, and products to Xero for faster, stress-free accounting Multiple Stores? No problem. Connect multiple Shopify stores to one Xero organisation with the first Shopify–Xero connector that has provided Shopify merchants with reliable service for over 15 years. Built for accuracy with full tax support: US & Canada sales tax (county, municipal, provincial), AU & NZ GST, UK & EU VAT. Scales with your growth to streamline accounting, cut manual entry, and keep you compliant. Multiple Stores? No problem. Connect multiple Shopify stores to one Xero organisation with the first Shopify–Xero connector that has provided Shopify merchants with reliable service for over 15 years. Built for accuracy with full tax support: US & Canada sales tax (county, municipal, provincial), AU & NZ GST, UK & EU VAT. Scales with your growth to streamline accounting, cut manual entry, and keep you compliant. more Import orders, POS sales and sales from other channels as Xero Invoices Import payments and payment fees Import refunds/returns as Xero Credit Notes Supports multiple payment transactions for one order - will import each one Import order fullfilments - Full support for edited orders (Beta)
BOLD Makes Xero Sync Simple! Seamless financial sync and reporting to XERO with global tax support. The Xero app ecommerce accountants love! Easily sync Shopify orders to Xero. Orders synced from Shopify to Xero will automatically include all line items, shipping and taxes. If your store's using Shopify Payments, refunds, discounts and payments automatically recorded separately. Bold's Xero App integrates with Shopify to offer refunds on line items, shipping and taxes. Import customers with your orders. Access data anytime with scheduled or on-demand syncing. Xero Sync is certified by Xero. The Xero app ecommerce accountants love! Easily sync Shopify orders to Xero. Orders synced from Shopify to Xero will automatically include all line items, shipping and taxes. If your store's using Shopify Payments, refunds, discounts and payments automatically recorded separately. Bold's Xero App integrates with Shopify to offer refunds on line items, shipping and taxes. Import customers with your orders. Access data anytime with scheduled or on-demand syncing. Xero Sync is certified by Xero. more Global Tax Support - Seamless integration between Xero Accounting and Shopify Sync products, sales, shipping, gift cards and refunds to Xero Accounting Export your payout fees and adjustments from Shopify Payments to Xero Accounting Your data is yours! Export on demand or automatically sync your data to Xero Dedicated Xero App support team and extensive help center documentation
This app transfers your orders automatically every single day. Save time and avoid errors. This app connects your Shopify webshop to your Yuki administration. That’s why you don’t have to manually type out data, since the orders are transferred automatically to Yuki. This is a real-time connection. You indicate when a Shopify order is transferred: When it is created, paid or partially paid. The correct price-details (e.g. order details) and customer-details are transferred to Yuki. A detailed online manual is available. This app connects your Shopify webshop to your Yuki administration. That’s why you don’t have to manually type out data, since the orders are transferred automatically to Yuki. This is a real-time connection. You indicate when a Shopify order is transferred: When it is created, paid or partially paid. The correct price-details (e.g. order details) and customer-details are transferred to Yuki. A detailed online manual is available. more Transfer your orders automatically into Yuki. This saves time and cost. The taxes and ledgercodes are assigned correctly in Yuki, avoiding errors. You don’t have to type data in both Yuki and your webshop, so no double entry. Connect Shopify with your Yuki software within 5 minutes!
Create and send personalized invoices for you orders. Fast, simple, international, compliant. Zenvio is invoicing system that helps you generate international invoices, customize how your invoices look, automatically feed and correct data. Zenvio is invoicing system that helps you generate international invoices, customize how your invoices look, automatically feed and correct data. more Automatically create and send invoices and notifications in multiple languages. Track whole process of the order including fulfillment and payment Customize the look and feel of invoices by color and logo
Connect, Automate, and enhance your business with Zoho Books. Seamlessly integrates your Shopify store with Zoho Books, simplifying your accounting processes. Automatically manage orders, products, and customer information in Zoho Books, reducing manual data entry and eliminating errors. Improve efficiency, save time, and gain control over your business with this powerful automation tool. Seamlessly integrates your Shopify store with Zoho Books, simplifying your accounting processes. Automatically manage orders, products, and customer information in Zoho Books, reducing manual data entry and eliminating errors. Improve efficiency, save time, and gain control over your business with this powerful automation tool. more Ability to decide which webbook data will be sent to Zoho Books. Events are logged and can be reviewed and exported for future review and use. App is easy to set up and requires no coding or technical knowledge.
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About Billing and invoicing Apps for Shopify
Billing and invoicing apps are essential tools for Shopify merchants looking to enhance their store's functionality and improve customer experience. These specialized applications help store owners streamline operations, increase sales, and provide better service to their customers.
When choosing a billing and invoicing app for your Shopify store, consider factors such as features, pricing, customer support, and compatibility with your theme and other apps. Reading reviews from other merchants can also provide valuable insights into the app's performance and reliability.
The apps listed on this page represent some of the best billing and invoicing solutions available in the Shopify App Store. Each has been selected based on its functionality, user ratings, and overall value for Shopify merchants.