Have confidence in your numbers with accurate & automated ecommerce accounting in QuickBooks or Xero A2X makes reconciling your Shopify payout data in QuickBooks Online (QBO), Xero, Sage, or NetSuite a breeze. Every Shopify transaction – sales, fees, taxes, refunds, gift cards, and more – is categorized into accurate summaries that reconcile perfectly with deposits in your accounting software. Leading merchants, accountants, and bookkeepers trust A2X to save hours on their bookkeeping, accurately track their taxes & COGS, increase the quality of their P&L, and gain true financial visibility. A2X makes reconciling your Shopify payout data in QuickBooks Online (QBO), Xero, Sage, or NetSuite a breeze. Every Shopify transaction – sales, fees, taxes, refunds, gift cards, and more – is categorized into accurate summaries that reconcile perfectly with deposits in your accounting software. Leading merchants, accountants, and bookkeepers trust A2X to save hours on their bookkeeping, accurately track their taxes & COGS, increase the quality of their P&L, and gain true financial visibility. more Accurately track your Shopify payout data in QuickBooks, Xero, Sage, or NetSuite Avoid overpaying taxes by assigning tax rules to every Shopify transaction type Stay on top of COGS by matching your cost of goods sold with your Shopify sales Streamline your B2B workflow by syncing wholesale orders with your GL Automate your ecommerce accounting for every channel you sell on including POS
Bank reconciliation Shopify Apps
Find top-rated Bank reconciliation tools for Shopify. Explore 20+ apps with detailed reviews, pricing information, and feature comparisons.
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We've analyzed thousands of bank reconciliation apps to identify the top performers based on ratings and install counts.
View Best Bank reconciliation AppsThe App Sync orders to QuickBooks, refunds, inventory, products and fees with QuickBooks in minutes. Get the app trusted by Shopify merchants and retail accounting teams to connect Shopify stores to QuickBooks. Simplify financial reporting, payment management, and inventory tracking. QUICKBOOKS SYNC allows you to easily sync all products, line items, sales, taxes, shipping, gift cards and refunds, while importing and managing customers. Leverage our years of experience supporting stores of all sizes across the US and Canada! Automatically sync store data or pull historical details on demand. Get the app trusted by Shopify merchants and retail accounting teams to connect Shopify stores to QuickBooks. Simplify financial reporting, payment management, and inventory tracking. QUICKBOOKS SYNC allows you to easily sync all products, line items, sales, taxes, shipping, gift cards and refunds, while importing and managing customers. Leverage our years of experience supporting stores of all sizes across the US and Canada! Automatically sync store data or pull historical details on demand. more Import orders and refunds from your Shopify Store to QuickBooks Automatically Sync Products and Inventory directly by connecting QuickBooks to Shopify Stores Export Store payout fees and adjustments from Shopify Payments to QuickBooks Own your data! Export on demand or automatically sync store data to QuickBooks Dedicated QuickBooks App support team and extensive help center documentation
Post sales data to accounting, reconcile payouts, manage purchase orders and file sales tax. With Bookkeep, close your books accurately and on-time with daily summary journal entries, fulfillment-based revenue recognition and order-to-cash reconciliation. Direct posting into QuickBooks Online, Intuit Enterprise Suite, NetSuite, Sage Intacct, Xero and more. Automatically file and pay your sales tax with a dedicated team of tax experts. Manage your purchase orders and receiving with Bookkeep Inventory (Stocky replacement). All managed through our embedded app in your Shopify admin! With Bookkeep, close your books accurately and on-time with daily summary journal entries, fulfillment-based revenue recognition and order-to-cash reconciliation. Direct posting into QuickBooks Online, Intuit Enterprise Suite, NetSuite, Sage Intacct, Xero and more. Automatically file and pay your sales tax with a dedicated team of tax experts. Manage your purchase orders and receiving with Bookkeep Inventory (Stocky replacement). All managed through our embedded app in your Shopify admin! more Post sales, tax, COGS & payouts to accounting by channel, location or market. Recognize revenue by fulfillment status and reconcile payouts by order. Manage purchase orders incl. weighted avg. cost, last cost and true landed cost. Managed service for sales tax registrations, calculations and filings. Split deposit and transfer funds to multiple banks incl. BOPIS and gift card tx.
Automatische Übertragung der Zahlungen und Transaktionen direkt in BuchhaltungsButler. Nahtlose Übergabe aller Zahlungen aus Shopify in BuchhaltungsButler, inklusive automatischen Splitbuchungen der Shopify-Gebühren und intelligenter Plausibilisierung. Für die perfekte Vorbereitung Ihrer E-Commerce Buchhaltung. Nahtlose Übergabe aller Zahlungen aus Shopify in BuchhaltungsButler, inklusive automatischen Splitbuchungen der Shopify-Gebühren und intelligenter Plausibilisierung. Für die perfekte Vorbereitung Ihrer E-Commerce Buchhaltung. more Automatische Übermittlung der Shopify Zahlungen an Ihre Buchhaltung Automatischer Split der Shopify-Gebühren Import und Abgleich der Payment Reference für detailliertes Belegmatching
CloudFO, your AI Finance colleague, does your analysis, reporting, & forecasts for smarter decisions CloudFO, your AI finance colleague, transforms financial management by providing real-time insights and automated reports, helping you stay on top of your business finances and make data-driven decisions that improve your bottom line. Seamlessly integrating with Shopify, business bank accounts, and other apps, CloudFO unifies your data. It helps you set goals, run forecasts and scenarios, and even runs your weekly finance meetings. It’s data that talks back to you. CloudFO, your AI finance colleague, transforms financial management by providing real-time insights and automated reports, helping you stay on top of your business finances and make data-driven decisions that improve your bottom line. Seamlessly integrating with Shopify, business bank accounts, and other apps, CloudFO unifies your data. It helps you set goals, run forecasts and scenarios, and even runs your weekly finance meetings. It’s data that talks back to you. more Net profit, Cash runway, sales, orders & spend insights by category, P&L & more Weekly finance reviews with weekly goal setting & tracking in just 5mins a week Cashflow forecasts, and answers to your complex questions in seconds Scenario planning to forecast & compare decisions before you make them. Real-time visual KPIs & automated reports for instant access to finance data
Automate complex ecommerce workflows across your operational stack. Eliminate manual work. Connex helps ecommerce and wholesale businesses automate workflows between Shopify, accounting systems, ERP platforms, inventory tools, and fulfillment providers. The app reduces manual data entry by syncing orders, inventory, customers, payouts, shipping updates, and accounting data across connected systems. Connex supports custom workflow rules and operational processes for businesses managing multiple sales channels, high order volume, or complex accounting requirements. Connex helps ecommerce and wholesale businesses automate workflows between Shopify, accounting systems, ERP platforms, inventory tools, and fulfillment providers. The app reduces manual data entry by syncing orders, inventory, customers, payouts, shipping updates, and accounting data across connected systems. Connex supports custom workflow rules and operational processes for businesses managing multiple sales channels, high order volume, or complex accounting requirements. more Use business logic to map customers, products and orders, using our Rules Engine Ensure all sales and refunds synced using automated payout matching. Multi-channel syncing with ShipStation, WooCommerce, Walmart and more! Sync B2B orders from your accounting system to ShipStation or Shopify. Update orders in your accounting system with shipping details, after shipment.
Automated Bookkeeping and Reconciliation with MYOB Accounting system Automatically sync Shopify data with MYOB accounting system (MYOB AccountRight or Essential) to save you hours from manual data entry. Dashi offers the most complete configuration to sync transactions (sales, COGS, refund, fee, giftcard, taxes, different payment gateways) to relevant accounts, as well as syncing product, customer and inventory. We push changes on an hourly basis to keep the system up to date. Automatically sync Shopify data with MYOB accounting system (MYOB AccountRight or Essential) to save you hours from manual data entry. Dashi offers the most complete configuration to sync transactions (sales, COGS, refund, fee, giftcard, taxes, different payment gateways) to relevant accounts, as well as syncing product, customer and inventory. We push changes on an hourly basis to keep the system up to date. more Reconcile every transaction into individual invoices or summarized invoices Sync transaction, customer and product with flexible configuration Sync MYOB item inventory with Shopify products Sync Unlimited Historical Data Get started quickly with 3 minutes setup & support
Prebuilt and Custom Reports to Automate Repetitive and Frustrating Data Tasks Instantly access reports to analyze any store data: sales, inventory, shipping, fulfillment, payouts, tax, customers, refunds and more. Build custom reports with meta fields, line item properties, note attributes and any field from your store API. Add calculations and formulas for unique data fields. Save, edit and rerun unlimited reports. Automate everything by scheduling reports in the format and destination you choose. Short on time? We are one click away from setting up your reports for you. Instantly access reports to analyze any store data: sales, inventory, shipping, fulfillment, payouts, tax, customers, refunds and more. Build custom reports with meta fields, line item properties, note attributes and any field from your store API. Add calculations and formulas for unique data fields. Save, edit and rerun unlimited reports. Automate everything by scheduling reports in the format and destination you choose. Short on time? We are one click away from setting up your reports for you. more Custom report fields from store API, with calculations Editable prebuilt report templates for every operation Export reports as Sheets, Excel, CSV, JSON, TXT or shareable link Schedule automated reports to email, FTP, drive or Sheets All report types from sales, marketing, inventory and more in one library
Save time every month on your accounting preparation with DATEV-compliant exports. Finally, no more accounting issues with Shopify bookings and the assignment of transaction data. With our solution, Shopify accounting data can be prepared within 10 minutes. The export includes sales data (including refunds, discounts, and shipping fees). Additional integrations, e.g. to payment providers, can be added via our platform. This provides your accounting department with a comprehensive package that greatly reduces manual work and eliminates sources of errors. Finally, no more accounting issues with Shopify bookings and the assignment of transaction data. With our solution, Shopify accounting data can be prepared within 10 minutes. The export includes sales data (including refunds, discounts, and shipping fees). Additional integrations, e.g. to payment providers, can be added via our platform. This provides your accounting department with a comprehensive package that greatly reduces manual work and eliminates sources of errors. more Accounting exports in DATEV format, incl. reconciliation of all payment data Refunds, discounts, and shipping fees: revenue by delivery country. OSS ready. Personal customer support and onboarding together with your tax advisor.
Ecommerce Accounting Software. Grow Profits with COGS Transparency and Margin Visibility Harness the power of cost visibility and watch your profits soar with COGS tracking and margin analytics in DayZero. DayZero provides reconciled, real time financials for your business, including tax and investor ready Profit & Loss, Cash Flow and Balance Sheet statements. DayZero syncs with Shopify to track unit and order cost information, so you know which products are making and losing you money. Ditch your basic accounting software and and bookkeeper TODAY—for a fraction of the cost. Harness the power of cost visibility and watch your profits soar with COGS tracking and margin analytics in DayZero. DayZero provides reconciled, real time financials for your business, including tax and investor ready Profit & Loss, Cash Flow and Balance Sheet statements. DayZero syncs with Shopify to track unit and order cost information, so you know which products are making and losing you money. Ditch your basic accounting software and and bookkeeper TODAY—for a fraction of the cost. more Onboarding takes less than 5 minutes. No credit card required. Full, tax and investor ready P&L, cash flow statement and balance sheet. Ecommerce / DTC analytics and COGS tracking Invoicing, Bill Pay and PO issuance Add-ons: Historical catchup bookkeeping, full service bookkeeping and tax filing
All-in-one retail team management: Time clock, payroll, scheduling, commissions, PTO & compliance. The staff management platform built for Shopify Point of Sale retail stores. Clock in from POS or mobile app, track timesheets, schedules, commissions, checklists, tips, and PTO - then run payroll in one place with Easyteam Payroll, QBO, Gusto, ADP or others. Set retail goals per location, track labor costs, performance, peak hours, and plan staffing ahead, so every store manager and deputy stays in sync. Easyteam serves as the homebase for your team, so new hires onboard with minimal training. The staff management platform built for Shopify Point of Sale retail stores. Clock in from POS or mobile app, track timesheets, schedules, commissions, checklists, tips, and PTO - then run payroll in one place with Easyteam Payroll, QBO, Gusto, ADP or others. Set retail goals per location, track labor costs, performance, peak hours, and plan staffing ahead, so every store manager and deputy stays in sync. Easyteam serves as the homebase for your team, so new hires onboard with minimal training. more Clock in and out from any location on Shopify Point of Sale (POS) or mobile. Schedule faster and smarter from any device, including the Shopify POS itself. Measure sales performance & robust commission plans for your team (+Victa). Manage your store's checklists (e.g., opening a store) directly from the POS. Run payroll crafted for retail, seamlessly with Easyteam or your own provider.
Export, import and copy data between all your stores, run 100+ reports in one currency. One account for every store you run. Export any of 27 entities, orders to metafields, into one CSV or Excel file spanning every store, on a schedule to email, FTP or Google Drive. Import and bulk-update products, customers, orders and 22 more from CSV, Excel, JSON or Google Sheets, with a dry run before commit, or copy them straight from one of your stores to another. Open 100+ editable reports across all stores in one currency and timezone, or write your own with SoloQL. Developer API included. One account for every store you run. Export any of 27 entities, orders to metafields, into one CSV or Excel file spanning every store, on a schedule to email, FTP or Google Drive. Import and bulk-update products, customers, orders and 22 more from CSV, Excel, JSON or Google Sheets, with a dry run before commit, or copy them straight from one of your stores to another. Open 100+ editable reports across all stores in one currency and timezone, or write your own with SoloQL. Developer API included. more Export 27 entities to CSV or Excel, every store in one file, on a schedule Import and bulk-update from CSV, Excel, JSON or Google Sheets, dry run first Copy products, collections, pages, discounts and more store to store 100+ editable reports across all your stores, one currency, one timezone Scheduled delivery to email, FTP or Google Drive; team roles; Developer API
Order management, accrual accounting, reconciliation, inventory sync for NetSuite and QuickBooks Entriwise connects Shopify to QuickBooks Desktop, QuickBooks Online, and NetSuite with automated accounting and COGS tracking. Automatically sync orders, refunds, inventory, and financial data. Track cost of goods sold accurately with support for bundles, variants, and SKU mapping. Shopify Payout reconciliation matches settlements to transactions with automated journal entries for fees and chargebacks. Multi-store support with classes and locations tracking. Real-time inventory sync from NetSuite. Historical data import available. Entriwise connects Shopify to QuickBooks Desktop, QuickBooks Online, and NetSuite with automated accounting and COGS tracking. Automatically sync orders, refunds, inventory, and financial data. Track cost of goods sold accurately with support for bundles, variants, and SKU mapping. Shopify Payout reconciliation matches settlements to transactions with automated journal entries for fees and chargebacks. Multi-store support with classes and locations tracking. Real-time inventory sync from NetSuite. Historical data import available. more automated accounting in QuickBooks and NetSuite inventory integration with advanced mapping inventory quantity sync from NetSuite real-time order flow to NetSuite
Our Fakturoid implementation will help you automate your accounting and invoicing within the EU. Connection to Fakturoid takes care of all invoicing and exports for accounting. You can customize the service to the specific needs of your business, from automating wire transfer payments and custom variable symbols to option to choose a different behavior for each payment method. Any changes in Shopify get automatically overwritten to Fakturoid and vice versa. Fakturoid also fully supports sales in different currencies and languages, so as an invoice management tool it will grow with you. Connection to Fakturoid takes care of all invoicing and exports for accounting. You can customize the service to the specific needs of your business, from automating wire transfer payments and custom variable symbols to option to choose a different behavior for each payment method. Any changes in Shopify get automatically overwritten to Fakturoid and vice versa. Fakturoid also fully supports sales in different currencies and languages, so as an invoice management tool it will grow with you. more Send invoices with a QR code by email directly to your customers. Automatic translation of invoices and emails for customers. Export to accounting systems (Pohoda, Money S3, ABRA Flexi, Ježek DUEL ...). Automatic marking of paid orders when paying by card or on account. Customer's VAT ID directly on the invoice. OSS and Reverse charge compliance.
Accounting software + service for ecommerce. Get real-time fully accurate bookkeeping & inventory Our team of expert accountants provide full-service bookkeeping and inventory management for ecommerce and multichannel brands, delivered through real-time accounting software. Get clean, tax-ready financials, 24/7, including Profit & Loss, Cash Flow, and Balance Sheet, as well as dashboards and KPIs built for founders. Our inventory sync functionality calculates COGS seamlessly so you finally have financial visibility you can trust. Our team of expert accountants provide full-service bookkeeping and inventory management for ecommerce and multichannel brands, delivered through real-time accounting software. Get clean, tax-ready financials, 24/7, including Profit & Loss, Cash Flow, and Balance Sheet, as well as dashboards and KPIs built for founders. Our inventory sync functionality calculates COGS seamlessly so you finally have financial visibility you can trust. more Tax-ready P&L, Cash Flow, Balance Sheet, and payable and receivable tracking Inventory sync & management (FIFO unit tracking) for ecommerce & retail Real-time financial dashboard built for founders Full history catch up - whether your books are messy or non-existent
Focal Software is an eCommerce Operations Suite for brands with accounting and inventory management. Focal empowers 3rd-party marketplace sellers, direct-to-consumer brands, and eCommerce agencies to streamline operations, generate sales, cut costs, and drive greater profitability. Focal Software saves time with accounting and bookkeeping every month, it provides a single platform to manage your business, it is an end-to-end platform, and you can manage your customer feedback requests, returns, inbox, and chat straight from Focal. Focal empowers 3rd-party marketplace sellers, direct-to-consumer brands, and eCommerce agencies to streamline operations, generate sales, cut costs, and drive greater profitability. Focal Software saves time with accounting and bookkeeping every month, it provides a single platform to manage your business, it is an end-to-end platform, and you can manage your customer feedback requests, returns, inbox, and chat straight from Focal. more Accounting - automated bookkeeping and financial statements Inventory Management - multi-channel, real-time, improved operational efficiency Supplier Management - effectively manage COGS and suppliers in one central place Order Management - streamline operations, enhance customer support, data-driven
Automated accounting and bookkeeping for Online, B2B, Wholesale, Subscription and POS sales in Xero Automate Xero accounting and bookkeeping for B2B, wholesale, online and POS sales. Post B2B orders as individual invoices, or summarise online and POS sales into daily invoices. Sync payments, refunds, discounts, shipping, gateway fees and taxes so payouts are ready to reconcile. Match orders to Xero contacts, apply payment terms, and keep inventory and COGS aligned by SKU. Free personal setup is included. Automate Xero accounting and bookkeeping for B2B, wholesale, online and POS sales. Post B2B orders as individual invoices, or summarise online and POS sales into daily invoices. Sync payments, refunds, discounts, shipping, gateway fees and taxes so payouts are ready to reconcile. Match orders to Xero contacts, apply payment terms, and keep inventory and COGS aligned by SKU. Free personal setup is included. more Choose individual or summarised invoices for B2B, online and POS sales Set Xero invoice due dates automatically from B2B payment terms Reconcile payouts from Shopify Payments, PayPal and other payment gateways Sync products and inventory to Xero sales, COGS and stock accounts Free personal setup for accounts, tax codes, tracking categories and locations
Connect your webshop with your accounting, POS, or inventory – automatic and efficient IEX makes it easy to transfer data between your systems and automate order management in your daily workflow. Save valuable time by connecting all your key systems to your webshop – accounting, inventory, and POS – so your data always flows automatically and accurately. You get a fully integrated solution that provides a solid data foundation and supports accurate bookkeeping and efficient inventory management – tailored to your specific needs. IEX makes it easy to transfer data between your systems and automate order management in your daily workflow. Save valuable time by connecting all your key systems to your webshop – accounting, inventory, and POS – so your data always flows automatically and accurately. You get a fully integrated solution that provides a solid data foundation and supports accurate bookkeeping and efficient inventory management – tailored to your specific needs. more Fully automated data transfer to relieve you for time-consuming manual tasks Easily set up plug n play integrations by yourself or order a set-up technician Highly customizable features to ensure a transfer that suits your daily workflow Connect multiple stores in the same workspace for a full overview of transfers Monitor all transfers with daily logs and error reports on email
Import your sales and refunds accurately to Tally ERP9 in a snap! Any business owner or accountant can use Khaata and press a few simple buttons to do a batch import of sales, credit notes, settlement receipts, and commission expenses. Khaata's Tally add-on can transfer 500 vouchers per minute into Tally, accurately. This helps you reconcile faster, file taxes ASAP, and understand your profitability. With our app's accuracy, you can minutely check each transaction and SKU profit margin in Tally ERP9. Any business owner or accountant can use Khaata and press a few simple buttons to do a batch import of sales, credit notes, settlement receipts, and commission expenses. Khaata's Tally add-on can transfer 500 vouchers per minute into Tally, accurately. This helps you reconcile faster, file taxes ASAP, and understand your profitability. With our app's accuracy, you can minutely check each transaction and SKU profit margin in Tally ERP9. more Import nearly 42 data points into Tally ERP9, fully accurate and GST Import 500 invoices in under a minute and be ready for tax filing Spend time selling by reducing reconciliation and enhancing transparency
Save hours on bookkeeping with automated QuickBooks sync. Every transaction categorized perfectly. Stop spending hours on manual QuickBooks reconciliation. Klavena automatically categorizes every transaction – sales, fees, taxes, refunds, shipping, and discounts – into accurate summaries that reconcile perfectly with your bank deposits. Trusted by merchants and their accountants to eliminate bookkeeping headaches while ensuring perfect tax accuracy, COGS tracking, and complete financial visibility. Stop spending hours on manual QuickBooks reconciliation. Klavena automatically categorizes every transaction – sales, fees, taxes, refunds, shipping, and discounts – into accurate summaries that reconcile perfectly with your bank deposits. Trusted by merchants and their accountants to eliminate bookkeeping headaches while ensuring perfect tax accuracy, COGS tracking, and complete financial visibility. more 100% accurate QuickBooks sync, captures every transaction type Detailed profit & loss summaries Automated inventory & COGS tracking One-click payout reconciliation Global marketplace support
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About Bank reconciliation Apps for Shopify
Bank reconciliation apps are essential tools for Shopify merchants looking to enhance their store's functionality and improve customer experience. These specialized applications help store owners streamline operations, increase sales, and provide better service to their customers.
When choosing a bank reconciliation app for your Shopify store, consider factors such as features, pricing, customer support, and compatibility with your theme and other apps. Reading reviews from other merchants can also provide valuable insights into the app's performance and reliability.
The apps listed on this page represent some of the best bank reconciliation solutions available in the Shopify App Store. Each has been selected based on its functionality, user ratings, and overall value for Shopify merchants.