No Bookkeeping Errors with real-time Sync for orders, inventory, payouts & more - QuickBooks Desktop If you're managing Shopify alongside Amazon, eBay, or Walmart and you're still manually entering orders into QuickBooks Desktop, your books are wrong and you know it. Webgility syncs every channel to QuickBooks Desktop automatically. Orders, inventory, payouts, fees, taxes, and reconciliation, all synced in real time, without a single manual entry. Businesses running 3+ channels and 500+ orders a month use Webgility to close their books in hours, not days. If you're managing Shopify alongside Amazon, eBay, or Walmart and you're still manually entering orders into QuickBooks Desktop, your books are wrong and you know it. Webgility syncs every channel to QuickBooks Desktop automatically. Orders, inventory, payouts, fees, taxes, and reconciliation, all synced in real time, without a single manual entry. Businesses running 3+ channels and 500+ orders a month use Webgility to close their books in hours, not days. more Every order, refund & fee posts to QuickBooks : exactly as your accountant needs Match Shopify payouts to QuickBooks automatically : no more reconciliation chaos Zero manual entry into QuickBooks : one fat-finger mistake breaks your whole P&L Sell across Shopify, Amazon & eBay : inventory updates the instant a sale closes POs, net terms & two-way payment sync : B2B and DTC running clean from one place
Multi-store Shopify Apps
Discover the best Multi-store apps for your Shopify store in 2026. Compare features, pricing, and reviews to find the perfect solution.
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We've analyzed thousands of multi-store apps to identify the top performers based on ratings and install counts.
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Integrate all your stores & auto-update products and inventories, making management hassle free. Via, ONDC Connector, Integrate with ONDC platform & all your shopify stores and manage products/variants and inventories just in a click. This makes managing your different stores less time consuming and less hectic. Make changes in Primary store and make them reflect in all other integrated Shopify stores. You can map more than one product in a single mapping session.You can provide the latest currency exchange rates in the configuration section. You can sell on ONDC ( India ) from this app. Via, ONDC Connector, Integrate with ONDC platform & all your shopify stores and manage products/variants and inventories just in a click. This makes managing your different stores less time consuming and less hectic. Make changes in Primary store and make them reflect in all other integrated Shopify stores. You can map more than one product in a single mapping session.You can provide the latest currency exchange rates in the configuration section. You can sell on ONDC ( India ) from this app. more Update inventory across all stores on every order fulfilment automatically. Map more than one product in a single mapping section. Auto import newly added products. Sell on ONDC ( India ) platform, sync products, inventory and orders.
Financial visibility, instantly! Not end of day / next week summary. Accurate QuickBooks accounting Decisions aren't made on stale data. Batched summary journals hide issues causing end-of-month closing books. WeIntegrate Shopify QuickBooks connector instantly creates real Sales Receipts / Invoices with line-item accuracy & Shopify Payouts automatically reconciled as QuickBooks Online (QBO) bank deposits linked to real QBO documents. Customers, products, inventory, taxes & tax nexus, fees, tips, RDF, COGS, refunds flow seamlessly. Balance Sheet, P&L, A/R, and inventory reports always current. Decisions aren't made on stale data. Batched summary journals hide issues causing end-of-month closing books. WeIntegrate Shopify QuickBooks connector instantly creates real Sales Receipts / Invoices with line-item accuracy & Shopify Payouts automatically reconciled as QuickBooks Online (QBO) bank deposits linked to real QBO documents. Customers, products, inventory, taxes & tax nexus, fees, tips, RDF, COGS, refunds flow seamlessly. Balance Sheet, P&L, A/R, and inventory reports always current. more Sales, fulfillments, refunds instantly sync as QuickBooks Online transactions Payouts automatically created as real reconciled QBO Deposit — not journal entry Penny accurate sales tax integration, physical and economic sales tax nexus Integrate POS, web, and draft orders into QBO from a single WeIntegrate account Gift cards, tips, fees and inventory instantly up-to-date without delay in QBO
AI Customer Service Automation | Instant Ticket Resolution,24/7 Omni-Channel Support with AI Chatbot Willdesk by Channelwill powers e-commerce support with AI automation (GPT-4): Order tracking, returns, cancellations, address updates via smart AI agent. Unifies email, livechat & social (Instagram/Messenger/WhatsApp) in a ticketing system. Smart Workflow Builder: Auto-cart recovery, product recommendations, ticket routing & instant FAQ responses. Deeply integrated with Shopify and ParcelPanel/TrackingMore /Dropshipman/Loloyal: streamline customer service. Branding: Custom HelpCenter,FAQ pages. Willdesk by Channelwill powers e-commerce support with AI automation (GPT-4): Order tracking, returns, cancellations, address updates via smart AI agent. Unifies email, livechat & social (Instagram/Messenger/WhatsApp) in a ticketing system. Smart Workflow Builder: Auto-cart recovery, product recommendations, ticket routing & instant FAQ responses. Deeply integrated with Shopify and ParcelPanel/TrackingMore /Dropshipman/Loloyal: streamline customer service. Branding: Custom HelpCenter,FAQ pages. more Branded Self-service widget,with Trackingmore API default, no extra tracking app AI-Driven Omnichannel: Product Recommendations, Emotion Detection, After-Sales Manage the inbox tickets from multiple social media, Chat, Email in a help desk Get complete customer index, Integrate with Klaviyo, Mailchimp, Privy, SMSBump Multi-store integration with support for customization of Fonts, FAQs, and Style
Automated product information import from your dropshipping suppliers. Wise2Sync is a dropship inventory automation and management software which specializes in monitoring, integrating, and updating product data from your dropship suppliers to your eCommerce platform. In other words: we have access to your suppliers feeds and our software monitors it constantly. This includes prices, quantities, descriptions, categories, images and all the other information that your suppliers provide. Wise2Sync is a dropship inventory automation and management software which specializes in monitoring, integrating, and updating product data from your dropship suppliers to your eCommerce platform. In other words: we have access to your suppliers feeds and our software monitors it constantly. This includes prices, quantities, descriptions, categories, images and all the other information that your suppliers provide. more Automated monitoring and synchronization of supplier feeds Updates of product data, ensuring accuracy and timeliness Seamless integration with your eCommerce platform Simplified supplier data management (prices, quantities, descriptions)
Automate order fulfillment, order & customer tagging, discounts, email marketing, cross-sell & more Tag orders with hot products, assign VIP customer tags, priority order tags, automated tags to auto tag customers by total spent, track fraud risk orders and tag automatically, automate emails for inventory alerts, auto email or cancel unpaid orders, auto fulfill or auto cancel orders from blacklisted customers, add automatic discounts, loyalty store credits, automatic tags, order editing, draft orders, automated order and customer notes, hide out-of-stock products, publish when back in stock... Tag orders with hot products, assign VIP customer tags, priority order tags, automated tags to auto tag customers by total spent, track fraud risk orders and tag automatically, automate emails for inventory alerts, auto email or cancel unpaid orders, auto fulfill or auto cancel orders from blacklisted customers, add automatic discounts, loyalty store credits, automatic tags, order editing, draft orders, automated order and customer notes, hide out-of-stock products, publish when back in stock... more One-click Playbooks: cross-sell, win-backs, checkout recovery, VIP perks & more Build Shopify flow automations with Liquid, loops and a no-code workflow builder Connect Mailchimp, Slack, Asana, Twilio, WhatsApp, Xero, Google Sheets, and more Order automation on schedule: delays, triggers, loops, conditions & stock alerts Generate checkout discounts, shipping, payment, and validation Shopify functions
This app transfers your orders automatically every single day. Save time and avoid errors. This app connects your Shopify webshop to your Visma administration. That’s why you don’t have to manually type out data, since the orders are transferred automatically to Visma. This is a real-time connection. You indicate when a Shopify order is transferred: When it is created, paid or partially paid. The correct price-details (e.g. order details) and customer-details are transferred to Visma. All details can be found in an online dedicated manual This app connects your Shopify webshop to your Visma administration. That’s why you don’t have to manually type out data, since the orders are transferred automatically to Visma. This is a real-time connection. You indicate when a Shopify order is transferred: When it is created, paid or partially paid. The correct price-details (e.g. order details) and customer-details are transferred to Visma. All details can be found in an online dedicated manual more Transfer your orders automatically into Visma. This saves time and cost. The taxes and ledgercodes are assigned correctly in Visma, avoiding errors. You don’t have to type data in both Visma and your webshop, so no double entry. Connect Shopify with your Visma software within 5 minutes!
Automatically sync orders, payout summaries, sales, refunds, taxes, fees & more to Xero & QuickBooks Automate your reconciliation process with our Xero & QuickBooks integration. Generate precise invoices for sales, fees, and more directly in Xero or QuickBooks. With Reconcilely, each invoice matches your bank deposits, including fees and refunds—enabling one-click reconciliation in Xero/QuickBooks. Identify profitability with COGS invoices sent to Xero & QuickBooks. Compatible with all payment gateways, customize ledger mappings, invoice references, and sync inventory and contacts. Automate your reconciliation process with our Xero & QuickBooks integration. Generate precise invoices for sales, fees, and more directly in Xero or QuickBooks. With Reconcilely, each invoice matches your bank deposits, including fees and refunds—enabling one-click reconciliation in Xero/QuickBooks. Identify profitability with COGS invoices sent to Xero & QuickBooks. Compatible with all payment gateways, customize ledger mappings, invoice references, and sync inventory and contacts. more Reduce your payout orders down to a single invoice, including taxable sales/fees Send orders to Xero/QuickBooks in real-time from all gateways & currencies Assign custom ledger account mappings based on product types or country groups Automatically organize tax-inclusive/exclusive sales, refunds, gift cards & fees Sync stock, inventory, contacts and apply advanced automations & deductions
Automatically sync orders, refunds, fees, and products to Xero for faster, stress-free accounting Multiple Stores? No problem. Connect multiple Shopify stores to one Xero organisation with the first Shopify–Xero connector that has provided Shopify merchants with reliable service for over 15 years. Built for accuracy with full tax support: US & Canada sales tax (county, municipal, provincial), AU & NZ GST, UK & EU VAT. Scales with your growth to streamline accounting, cut manual entry, and keep you compliant. Multiple Stores? No problem. Connect multiple Shopify stores to one Xero organisation with the first Shopify–Xero connector that has provided Shopify merchants with reliable service for over 15 years. Built for accuracy with full tax support: US & Canada sales tax (county, municipal, provincial), AU & NZ GST, UK & EU VAT. Scales with your growth to streamline accounting, cut manual entry, and keep you compliant. more Import orders, POS sales and sales from other channels as Xero Invoices Import payments and payment fees Import refunds/returns as Xero Credit Notes Supports multiple payment transactions for one order - will import each one Import order fullfilments - Full support for edited orders (Beta)
XoroERP is tailored for eCommerce, retail & wholesale, scaling your business seamlessly XoroERP is the ideal solution for businesses that have outgrown their accounting applications and seek to enhance their processes. Specializing in integrating various operations into a single platform, XoroERP empowers eCommerce and wholesale merchants to streamline their operations, enhance profitability, and achieve efficiency by seamlessly integrating order management, inventory management, warehousing, purchasing, manufacturing, financials, and customer service within one unified system. XoroERP is the ideal solution for businesses that have outgrown their accounting applications and seek to enhance their processes. Specializing in integrating various operations into a single platform, XoroERP empowers eCommerce and wholesale merchants to streamline their operations, enhance profitability, and achieve efficiency by seamlessly integrating order management, inventory management, warehousing, purchasing, manufacturing, financials, and customer service within one unified system. more Orders, Order Editing, Payments, Products, Refunds, and Ship Confirmation Sync Real-time Inventory Sync for up to 10 inventory levels Automatic Payouts Sync, no manual effort Automatic Gift Card Sync Shopify Markets for International Currency Orders
This app transfers your orders automatically every single day. Save time and avoid errors. This app connects your Shopify webshop to your Yuki administration. That’s why you don’t have to manually type out data, since the orders are transferred automatically to Yuki. This is a real-time connection. You indicate when a Shopify order is transferred: When it is created, paid or partially paid. The correct price-details (e.g. order details) and customer-details are transferred to Yuki. A detailed online manual is available. This app connects your Shopify webshop to your Yuki administration. That’s why you don’t have to manually type out data, since the orders are transferred automatically to Yuki. This is a real-time connection. You indicate when a Shopify order is transferred: When it is created, paid or partially paid. The correct price-details (e.g. order details) and customer-details are transferred to Yuki. A detailed online manual is available. more Transfer your orders automatically into Yuki. This saves time and cost. The taxes and ledgercodes are assigned correctly in Yuki, avoiding errors. You don’t have to type data in both Yuki and your webshop, so no double entry. Connect Shopify with your Yuki software within 5 minutes!
An all-in-one ecommerce operations platform: Inventory, order management, and shipping in one app. It's time for better inventory & fulfillment tools! Zenventory is an all-in-one ecommerce operations platform for managing inventory and fulfillment across multiple channels, with seamless integrations to all top marketplaces & shipping carriers. With unlimited users, customizable workflows, and an easy-to-use interface built specifically for warehouse teams, Zenventory helps to accelerate order fulfillment and eradicate inefficiencies for the fastest-growing brands. It's time for better inventory & fulfillment tools! Zenventory is an all-in-one ecommerce operations platform for managing inventory and fulfillment across multiple channels, with seamless integrations to all top marketplaces & shipping carriers. With unlimited users, customizable workflows, and an easy-to-use interface built specifically for warehouse teams, Zenventory helps to accelerate order fulfillment and eradicate inefficiencies for the fastest-growing brands. more Multi-location inventory management & fulfillment orchestration. Batch shipping with carrier rate optimization. Powerful automation rules to eliminate the grunt work. One price, unlimited users. Android/iOS mobile app so you can handle tasks from anywhere in the warehouse.
Create and send personalized invoices for you orders. Fast, simple, international, compliant. Zenvio is invoicing system that helps you generate international invoices, customize how your invoices look, automatically feed and correct data. Zenvio is invoicing system that helps you generate international invoices, customize how your invoices look, automatically feed and correct data. more Automatically create and send invoices and notifications in multiple languages. Track whole process of the order including fulfillment and payment Customize the look and feel of invoices by color and logo
AI Chat, AI Chatbot & AI Helpdesk. Agentic sales & support: live chat, WhatsApp, Instagram & email Proactive Shopify AI Chat & AI Chatbot built to turn customer support into sales. It greets shoppers on Live Chat, WhatsApp, Instagram and email. The AI Agent acts in the AI chat: order tracking, discounts, product recommendations, upsells, returns & refunds, cart recovery & FAQ automation. It handles customer support and customer service 24/7, on all channels. With custom tools and skills it acts inside any software you connect, from your CRM to checkout. Fully multilingual & self-training. Proactive Shopify AI Chat & AI Chatbot built to turn customer support into sales. It greets shoppers on Live Chat, WhatsApp, Instagram and email. The AI Agent acts in the AI chat: order tracking, discounts, product recommendations, upsells, returns & refunds, cart recovery & FAQ automation. It handles customer support and customer service 24/7, on all channels. With custom tools and skills it acts inside any software you connect, from your CRM to checkout. Fully multilingual & self-training. more One AI Agent active in AI Chatbot & Live Chat across WhatsApp, Instagram & email AI Chat takes actions: order tracking, returns, COD, discounts & stock checks AI customer support & customer service: product, sizing, shipping & FAQ answers AI Sales Chatbot & Shopping Assistant: recommendations, upsells & cart recovery Multilingual conversational AI Agent ties every chat to revenue, 24/7 on AI Chat
ネクストエンジンとの自動連携を実現したアプリです。 本アプリを購入することで以下の連携を自動で行うことができます。 # 受注の自動取込み Shopifyに注文が入ると自動的にネクストエンジンに受注伝票が作成されます。その他運営するEC店舗の受注もネクストエンジンで管理することで、それぞれの管理画面にて操作する必要なくネクストエンジンの画面上で受注伝票の処理が可能です。 # 在庫情報を自動反映 ネクストエンジンの在庫数をShopifyに自動反映します。その他運営するEC店舗の在庫もネクストエンジンより反映させることができ、ネクストエンジン上で在庫の一元管理が可能です。 # 出荷情報を自動反映 ネクストエンジン上で伝票を処理するだけで、送り状番号と発送方法（配送業者）がShopify上の受注にも反映されるようになります。 【新機能追加のお知らせ】 - 分割・同梱の操作をした受注伝票のShopifyへの出荷通知連携に対応しました。 - Shopifyと連携したFacebook、Instagramからの受注取込みに対応しました。 - セット商品の在庫連携に対応しました。 ※カスタマイズが必要な場合は、Shopify App Storeに掲載されている認定アプリをご利用ください。 # 受注の自動取込み Shopifyに注文が入ると自動的にネクストエンジンに受注伝票が作成されます。その他運営するEC店舗の受注もネクストエンジンで管理することで、それぞれの管理画面にて操作する必要なくネクストエンジンの画面上で受注伝票の処理が可能です。 # 在庫情報を自動反映 ネクストエンジンの在庫数をShopifyに自動反映します。その他運営するEC店舗の在庫もネクストエンジンより反映させることができ、ネクストエンジン上で在庫の一元管理が可能です。 # 出荷情報を自動反映 ネクストエンジン上で伝票を処理するだけで、送り状番号と発送方法（配送業者）がShopify上の受注にも反映されるようになります。 【新機能追加のお知らせ】 - 分割・同梱の操作をした受注伝票のShopifyへの出荷通知連携に対応しました。 - Shopifyと連携したFacebook、Instagramからの受注取込みに対応しました。 - セット商品の在庫連携に対応しました。 ※カスタマイズが必要な場合は、Shopify App Storeに掲載されている認定アプリをご利用ください。 more #受注の自動取込み その他ネクストエンジンと連携しているEC店舗の受注含め、ネクストエンジンの画面上だけで処理することができます。 #在庫情報を自動反映 その他運営するEC店舗の在庫もネクストエンジンと連携させることで、ネクストエンジンの画面上で在庫の一元管理が可能です。 #出荷情報を自動反映 ネクストエンジン上で伝票を処理するだけで、送り状番号と発送方法（配送業者）がShopify上の受注にも反映されるようになります。
support over 60 cross-border platforms, 600 logistics channels, and 200 overseas warehouse systems Order: native APIs aggregate 60+ marketplaces in real time; Auto splits or blocks loss-making orders, then ranks 600+ carriers by cost and speed to print the optimal label within minutes. Warehouse: one system rules 3PL, FBA and self-run stock. OWMS keeps inventory live at SKU-location level, issues low-stock alerts and ageing reports, and drives barcode receiving, QC, wave picking, cycle count and kitting. Product: a single SKU card carries specs, supplier quotes and lifecycle margin; Order: native APIs aggregate 60+ marketplaces in real time; Auto splits or blocks loss-making orders, then ranks 600+ carriers by cost and speed to print the optimal label within minutes. Warehouse: one system rules 3PL, FBA and self-run stock. OWMS keeps inventory live at SKU-location level, issues low-stock alerts and ageing reports, and drives barcode receiving, QC, wave picking, cycle count and kitting. Product: a single SKU card carries specs, supplier quotes and lifecycle margin; more order process warehouse manage product manage
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About Multi-store Apps for Shopify
Multi-store apps are essential tools for Shopify merchants looking to enhance their store's functionality and improve customer experience. These specialized applications help store owners streamline operations, increase sales, and provide better service to their customers.
When choosing a multi-store app for your Shopify store, consider factors such as features, pricing, customer support, and compatibility with your theme and other apps. Reading reviews from other merchants can also provide valuable insights into the app's performance and reliability.
The apps listed on this page represent some of the best multi-store solutions available in the Shopify App Store. Each has been selected based on its functionality, user ratings, and overall value for Shopify merchants.