Sync sales, inventory & more both ways with QuickBooks Desktop for accurate, effortless accounting. Simplify your ecommerce accounting with our powerful QuickBooks Desktop connector. Using QB Online or Xero? See our other Shopify apps. Seamlessly sync your data with QuickBooks: customers, orders, payments, payouts, purchase orders, products, inventory levels, pricing & more. Tailor to your workflow with features like automap, custom fields and advanced settings. Enjoy quick setup, user-friendly interface, and reliable support! Automating your accounting frees up time to grow your business. Simplify your ecommerce accounting with our powerful QuickBooks Desktop connector. Using QB Online or Xero? See our other Shopify apps. Seamlessly sync your data with QuickBooks: customers, orders, payments, payouts, purchase orders, products, inventory levels, pricing & more. Tailor to your workflow with features like automap, custom fields and advanced settings. Enjoy quick setup, user-friendly interface, and reliable support! Automating your accounting frees up time to grow your business. more Peace of mind with up-to-date, accurate data in both Shopify and QuickBooks Sync individual orders or summaries, payouts, inventory, purchase orders & more Advanced features like Purchase Order syncing & Shopify B2B support Manage syncing directly from within your Shopify admin Get started in minutes with our top-rated 24/7 Customer Support
Multi-store Shopify Apps
Discover the best Multi-store apps for your Shopify store in 2026. Compare features, pricing, and reviews to find the perfect solution.
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Effortlessly automate ecommerce accounting. Sync data accurately, both ways with QuickBooks Online. Simplify your ecommerce accounting with our powerful QuickBooks Online integration. Using QB Desktop or Xero? See our other Shopify apps. Seamlessly sync your data with QuickBooks: customers, orders, payments, payouts, purchase orders, products, inventory levels, pricing & more. Tailor to your workflow with features like automap, custom fields and advanced settings. Enjoy quick setup, user-friendly interface, and reliable support! Automating your accounting frees up time to grow your business. Simplify your ecommerce accounting with our powerful QuickBooks Online integration. Using QB Desktop or Xero? See our other Shopify apps. Seamlessly sync your data with QuickBooks: customers, orders, payments, payouts, purchase orders, products, inventory levels, pricing & more. Tailor to your workflow with features like automap, custom fields and advanced settings. Enjoy quick setup, user-friendly interface, and reliable support! Automating your accounting frees up time to grow your business. more Have peace of mind with up-to-date, accurate data in both Shopify and QuickBooks Sync individual orders or summaries, payouts, inventory, purchase orders & more Built for Shopify! Manage the sync directly from within your Shopify store Advanced features like custom field mapping, purchase order syncing, and more Get started in minutes and enjoy amazing, friendly support - and 1:1 setup calls
Publish products, sync inventory, and manage orders across channels. Increase your exposure. Grow your sales by publishing products on leading channels like eBay, Etsy, Amazon, TikTok Shop, and more. Expand through marketplaces, social channels, and advertising platforms while keeping inventory automatically synced. Edit products from Shopify or Nembol, manage all channels in one place, send orders back to Shopify, or fulfill with Amazon MCF. Run promotions, apply pricing rules, and simplify multichannel commerce with powerful automation. Grow your sales by publishing products on leading channels like eBay, Etsy, Amazon, TikTok Shop, and more. Expand through marketplaces, social channels, and advertising platforms while keeping inventory automatically synced. Edit products from Shopify or Nembol, manage all channels in one place, send orders back to Shopify, or fulfill with Amazon MCF. Run promotions, apply pricing rules, and simplify multichannel commerce with powerful automation. more Publish products across Amazon, eBay, Etsy, TikTok Shop, and other channels Automatically sync inventory and product updates across all connected channels Manage multichannel orders and fulfillment from one centralized dashboard Edit products once and instantly update Shopify and every connected channel Boost sales with promotions, pricing rules, and multichannel automation
Keep inventory and orders in sync across every sales channel Okomano helps multichannel merchants keep inventory and orders in sync across every sales channel. Connect Shopify with Amazon, Walmart, Wayfair, Rithum and ERP systems like SAP Business One to automate order flow, synchronize inventory and streamline fulfillment from one centralized platform. Whether you're selling on one channel or many, Okomano keeps your operations connected so you can scale without manual work. Okomano helps multichannel merchants keep inventory and orders in sync across every sales channel. Connect Shopify with Amazon, Walmart, Wayfair, Rithum and ERP systems like SAP Business One to automate order flow, synchronize inventory and streamline fulfillment from one centralized platform. Whether you're selling on one channel or many, Okomano keeps your operations connected so you can scale without manual work. more Sync inventory across Shopify, Amazon, Walmart, Wayfair, Rithum and more Centralize orders from every connected sales channel Connect SAP Business One, shipping and accounting systems Automate order flow, fulfillment and inventory synchronization
Sync with Shopee, Lazada, TikTok Shop, RedMart, Zalora, WooCommerce, Temu and more! OneCart is your all-in-one multi-channel e-commerce and store management platform. Sync inventory effortlessly across all major marketplaces, including Shopee, Lazada, Zalora, TikTok Shop, Amazon, and Magento. Our inventory sync system ensures real-time stock sync, preventing overselling and stockouts. Use OneCart to manage orders and list products in one place. With OneCart, you get unified analytics, automated operations, and robust inventory management tools that help you grow and scale. OneCart is your all-in-one multi-channel e-commerce and store management platform. Sync inventory effortlessly across all major marketplaces, including Shopee, Lazada, Zalora, TikTok Shop, Amazon, and Magento. Our inventory sync system ensures real-time stock sync, preventing overselling and stockouts. Use OneCart to manage orders and list products in one place. With OneCart, you get unified analytics, automated operations, and robust inventory management tools that help you grow and scale. more Smart Product Listing: Create once, publish everywhere with bulk cross-posting Automated Inventory Management: Real-time stock sync and inventory manager tools Centralized Order Processing: Handle all channel orders in one interface
Official OneStock Connector - Faster time to market, Lower TCO and Advanced Omnichannel Capabilities This connector allows you to synchronize your products, stocks and orders data between your OMS and your Shopify store. Focus your system integrator on enhancing the website's client experience, instead of connecting two systems. This application requires a OneStock account, a OneStock API credentials, and a configured SFTP server to work. This connector allows you to synchronize your products, stocks and orders data between your OMS and your Shopify store. Focus your system integrator on enhancing the website's client experience, instead of connecting two systems. This application requires a OneStock account, a OneStock API credentials, and a configured SFTP server to work. more Synchronise your product data with OneStock Import unified inventory to your online shop Synchronise order status and information (carrier label, tracking link, ...) Display delivery promises to your clients Allow a unified click and collect delivery option
Ongoing WMS is a warehouse management system. It can be used by a 3PL or in your own warehouse. Connect Ongoing WMS to your Shopify account(s) to seamlessly outsource the warehousing to one of the 3PLs using Ongoing WMS, or use it for increased efficiency in your own warehouse. Ongoing specializes in a web-based Warehouse Management System for logistics-intensive companies. Ongoing WMS is easy to learn and implement and has a wide ecosystem of integrations. Automate label printing process, batch orders to pick faster, scan items for increased accuracy. Continue to grow your business! Connect Ongoing WMS to your Shopify account(s) to seamlessly outsource the warehousing to one of the 3PLs using Ongoing WMS, or use it for increased efficiency in your own warehouse. Ongoing specializes in a web-based Warehouse Management System for logistics-intensive companies. Ongoing WMS is easy to learn and implement and has a wide ecosystem of integrations. Automate label printing process, batch orders to pick faster, scan items for increased accuracy. Continue to grow your business! more Connect Shopify to a warehouse which uses Ongoing WMS. 3PL or your own. Pick faster by batching orders, using a picking cart and get an efficient route. Increase picking accuracy by using a handheld device and scan barcodes. Perishables? Full support for lot numbers, expiry dates and serial numbers. Connect multiple Shopify accounts to one warehouse for sharing the inventory.
Save time and scale: Automate order actions, grow revenue with post-purchase upsells, and more Order Automator helps you save time and increase revenue with automated workflows, post-purchase upsells, Fraud Guard, custom notifications, scheduled automations, and Amazon MCF fulfillment. Create rules that tag, fulfill, notify, monitor, or protect orders. Launch smart cross-sell offers after checkout to increase AOV without disrupting the buying experience. Explore features, activate what helps you, and request customizations to tailor to your specific use case. Order Automator helps you save time and increase revenue with automated workflows, post-purchase upsells, Fraud Guard, custom notifications, scheduled automations, and Amazon MCF fulfillment. Create rules that tag, fulfill, notify, monitor, or protect orders. Launch smart cross-sell offers after checkout to increase AOV without disrupting the buying experience. Explore features, activate what helps you, and request customizations to tailor to your specific use case. more Automate order actions: fulfillment, tag manager, notes, scheduled jobs, etc Launch post-purchase upsells to increase AOV after checkout Create custom email notifications to send to staff, suppliers, and partners Connect Amazon MCF, sync inventory, auto fulfill orders using FBA inventory Fraud Guard: Auto hold, cancel, or get notified on high risk orders
Automate your ecommerce orders by connecting to hundreds of fulfillment and POD integrations! Order Desk is an order management app that lets merchants, artists, and suppliers automate their order fulfillment workflow using our Rule Builder and hundreds of integrated services including shopping carts and marketplaces, print on demand fulfillment partners, shipping companies, CRMs and more. Order Desk is an order management app that lets merchants, artists, and suppliers automate their order fulfillment workflow using our Rule Builder and hundreds of integrated services including shopping carts and marketplaces, print on demand fulfillment partners, shipping companies, CRMs and more. more Use the Rules Engine to automate your orders based on any set of criteria Connect to hundreds of integrations—shipping, fulfillment, print on demand, etc. Completely Customizable—There's something for every unique order workflow
Automated Order Splitting & Routing to Multiple Suppliers, Stores & 3PLs, Real-Time Inventory Sync Are you a dropshipper, retailer or marketplace already working with multiple suppliers, stores or 3PLs? Scale smarter, fulfill faster and eliminate manual work with automated order routing. Split & assign orders across multiple suppliers, stores or 3PLs with advanced routing rules. Enhance customer satisfaction - stop overselling and cancelled orders with real-time supplier inventory syncing. Easy to get started and scale with AI-guided setup. Add suppliers, stores and 3PLs in clicks, not weeks. Are you a dropshipper, retailer or marketplace already working with multiple suppliers, stores or 3PLs? Scale smarter, fulfill faster and eliminate manual work with automated order routing. Split & assign orders across multiple suppliers, stores or 3PLs with advanced routing rules. Enhance customer satisfaction - stop overselling and cancelled orders with real-time supplier inventory syncing. Easy to get started and scale with AI-guided setup. Add suppliers, stores and 3PLs in clicks, not weeks. more Auto split orders & route each item request to the right supplier, store or 3PL Send orders to suppliers and 3PLs via ShipStation, email or our web portal Real-time product, inventory, order and tracking sync across Shopify stores Prepaid shipping labels simplify your workflow and control your shipping costs AI-guided setup for routing rules, suppliers, stores, 3PLs and more
OTTO Integration: Tools for item and order management, plus seamless shop synchronization. M2E Cloud OTTO Importer enables near real-time inventory synchronization with OTTO to help prevent overselling. Link items directly from your admin panel, giving you full control and flexible pricing strategies. Available for sellers in Germany, it supports efficient management, synchronization, and GPSR compliance. Consolidate all OTTO orders in one place. M2E Cloud OTTO Importer enables near real-time inventory synchronization with OTTO to help prevent overselling. Link items directly from your admin panel, giving you full control and flexible pricing strategies. Available for sellers in Germany, it supports efficient management, synchronization, and GPSR compliance. Consolidate all OTTO orders in one place. more Effortlessly manage your online shop and OTTO accounts from one central place. Near real-time inventory synchronization to help prevent overselling. Easily link products individually or in bulk via the admin panel. Synchronize ordered products across all connected channels in near real time. Consolidate all OTTO orders in one place for efficient management.
Automated Exchanges. Powerful Help Desk software. Unlimited Tickets, Agents & Automations. All-in-1. Outvio offers a powerful Exchanges and Returns management tool and a groundbreaking Help Desk platform for your Shopify store. Complete with a fully branded self-service portal for your customers, live chat and easy-to-use ticketing management for all contact channels. Outvio also allows you to efficiently automate your entire post-purchase workflow, encompassing order fulfilment, shipping, tracking, and customer communication. Truly everything you need, in one single easy-to-use platform. Outvio offers a powerful Exchanges and Returns management tool and a groundbreaking Help Desk platform for your Shopify store. Complete with a fully branded self-service portal for your customers, live chat and easy-to-use ticketing management for all contact channels. Outvio also allows you to efficiently automate your entire post-purchase workflow, encompassing order fulfilment, shipping, tracking, and customer communication. Truly everything you need, in one single easy-to-use platform. more Returns and Exchanges, Upselling with instant Checkout within the Returns Portal Refunds to Store Credit, Giftcards, built-in Pickup & Return Label generation HelpDesk and Ticketing software with Unlimited agents, tickets and automations Live-Chat. Single Inbox for Email, SMS, WhatsApp and Social Media conversations Smart Fulfilment & Shipping (130+ carriers), fully branded Delivery Tracking
Auto-sync PayPal tracking in real time. Help reduce holds, disputes, and manual work. PalSync automatically sends tracking numbers, carrier details, and delivery updates from Shopify to PayPal. Keep new orders synced in real time, back-sync up to 365 days of past orders in one click, and manage unlimited PayPal accounts from one dashboard. Free PayPal dispute management, custom courier mapping, and digital product sync reduce manual work and help you respond with delivery evidence. Supports online and POS orders. PalSync automatically sends tracking numbers, carrier details, and delivery updates from Shopify to PayPal. Keep new orders synced in real time, back-sync up to 365 days of past orders in one click, and manage unlimited PayPal accounts from one dashboard. Free PayPal dispute management, custom courier mapping, and digital product sync reduce manual work and help you respond with delivery evidence. Supports online and POS orders. more Auto-sync tracking numbers, carriers, and delivery updates to PayPal Back-sync up to 365 days of past PayPal orders in one click Manage PayPal disputes for free with tracking and delivery evidence Connect and manage unlimited PayPal accounts from one dashboard Map PayPal-supported couriers and sync digital product orders
Agents that ops and finance teams actually rely on. Parabola is the AI agent platform for ops and finance teams. You describe your messy, recurring processes (the work that lives in macros, Python scripts, and tribal knowledge today) like reconciliations, carrier billing audits, accruals, inventory checks, and PO matching. Parabola builds the agents that run them on schedule, handle the unstructured inputs (PDFs, screenshots, multi-tab spreadsheets) a human analyst would handle, and show their work at every step. Parabola is the AI agent platform for ops and finance teams. You describe your messy, recurring processes (the work that lives in macros, Python scripts, and tribal knowledge today) like reconciliations, carrier billing audits, accruals, inventory checks, and PO matching. Parabola builds the agents that run them on schedule, handle the unstructured inputs (PDFs, screenshots, multi-tab spreadsheets) a human analyst would handle, and show their work at every step. more Automate complex processes to save time, avoid errors, and alert your team Leverage AI to organize messy data across emails, PDFs, and spreadsheets Reconcile orders and inventory levels between Shopify and systems like NetSuite Set up custom alerts for unfulfilled Shopify orders or low inventory levels Combine Shopify data with data from other sources in your stack
Automated Sales Sync to QuickBooks Online & Intuit Enterprise Suite – Individual Order or Summary Simplify your Shopify accounting and reconciliation with a flexible sync solution designed for your business. Individual Order Sync lets you export Orders, Products, Customers, Taxes, and other order details to QuickBooks Online or Intuit Enterprise Suite, either automatically or manually at your convenience. Summary Sync provides an easier way to reconcile payments by creating one entry for each Shopify payout and one daily summary entry for other payment methods. Simplify your Shopify accounting and reconciliation with a flexible sync solution designed for your business. Individual Order Sync lets you export Orders, Products, Customers, Taxes, and other order details to QuickBooks Online or Intuit Enterprise Suite, either automatically or manually at your convenience. Summary Sync provides an easier way to reconcile payments by creating one entry for each Shopify payout and one daily summary entry for other payment methods. more Sync Shopify sales data to QuickBooks Online and Intuit Enterprise Suite Individual Order Sync with Customers, Products, Taxes, and order details Summary Sync for easier payment and payout reconciliation Automated or manual sync options Easy reconciliation of Shopify sales and payments
Sync sales data to Xero easily in an automated manner - individual orders or summary sync options Sync sales data to Xero easily in an automated manner - Individual orders OR Summary sync options. With Individual Orders you can export all your Orders, Products & Customer data to Xero Automatically. You can choose to sync your data to Xero automatically or prefer to do it manually at your convenience. With Summary Sync our app will create one invoice for each Payout from Shopify. Also, our app will create one invoice per day for each of the other payment methods. Sync sales data to Xero easily in an automated manner - Individual orders OR Summary sync options. With Individual Orders you can export all your Orders, Products & Customer data to Xero Automatically. You can choose to sync your data to Xero automatically or prefer to do it manually at your convenience. With Summary Sync our app will create one invoice for each Payout from Shopify. Also, our app will create one invoice per day for each of the other payment methods. more Individual Order Sync - Includes Customer, Products, Taxes and All details Summary Invoice Sync - Create Invoice by Payment method for Easy Reconciliation Automated Sync Process throughout the day Very Easy Reconciliation
Sync sales to QuickBooks Desktop in an automated manner - Sync individual orders Sync sales data to QuickBooks Desktop or Enterprise editions easily in an automated manner - Sync Individual orders With Individual Orders you can export all your Orders, Products & Customer data to QuickBooks Automatically. You can sync data to QuickBooks automatically or prefer to do it manually at your convenience. Summary Sync: With Summary Sync our app will create one entry for each Payout from Shopify and one entry per day for each of the other payment methods. Sync sales data to QuickBooks Desktop or Enterprise editions easily in an automated manner - Sync Individual orders With Individual Orders you can export all your Orders, Products & Customer data to QuickBooks Automatically. You can sync data to QuickBooks automatically or prefer to do it manually at your convenience. Summary Sync: With Summary Sync our app will create one entry for each Payout from Shopify and one entry per day for each of the other payment methods. more Individual Order Sync - Includes Customer, Products, Taxes and All details Automated Sync Process Very Easy Reconciliation Summary Invoice Sync - Sync Daily Summary or Settlement Summary
Stop losing sales to stockouts. Count with barcodes, forecast demand, and reorder with confidence. Running out of bestsellers costs sales. Dead stock ties up cash. Manual spreadsheets for purchase orders waste hours every week. Stock Control gives you real-time inventory health across every location: barcode counts that match the shelf, demand forecasts from your actual sales velocity, reorder alerts before SKUs run out, purchase orders with supplier and cost tracking, and transfers between locations. Every manual adjustment is logged so your team stays accountable. Running out of bestsellers costs sales. Dead stock ties up cash. Manual spreadsheets for purchase orders waste hours every week. Stock Control gives you real-time inventory health across every location: barcode counts that match the shelf, demand forecasts from your actual sales velocity, reorder alerts before SKUs run out, purchase orders with supplier and cost tracking, and transfers between locations. Every manual adjustment is logged so your team stays accountable. more Count inventory with barcodes — fast, accurate, multi-staff counting Forecast demand from real sales to know what to reorder and when Manage purchase orders with suppliers, costs, and bulk CSV import Transfer stock between locations and scan items as you receive them Full adjustment audit trail — every change tracked with reason and user
All your data in one analytics platform. Export, report, analyze, and explore your data. Try it now. Connect all your sources of data together to understand how to grow your profit. Analyze multiple stores, marketing channels, and more like Amazon, Etsy and more. See how your Google Ads or Facebook Ads are performing on ROAS. Analyze your UPS labels or ShipStation costs. Connect your Stripe, Braintree, or PayPal accounts so you can analyze gateway fees and understand Gross Margin % or Profit. Get your Ecommerce Dashboard setup & working for your business! Connect all your sources of data together to understand how to grow your profit. Analyze multiple stores, marketing channels, and more like Amazon, Etsy and more. See how your Google Ads or Facebook Ads are performing on ROAS. Analyze your UPS labels or ShipStation costs. Connect your Stripe, Braintree, or PayPal accounts so you can analyze gateway fees and understand Gross Margin % or Profit. Get your Ecommerce Dashboard setup & working for your business! more Unlock your data and access mission critical information to grow your business. Export your date and integrate it with other mission critical services. Analyze your business, products, customers, and get your team on the same page. Share and export your reports to PDF, Excel, CSV, Google Sheets. Scheduled reports are automatically sent via email or to Google Sheets.
Warehouse software for e-commerce. Professional. Simple. Set it up yourself & start picking. Picqer helps you make the processes in your warehouse smarter and more efficient. With Picqer you work more calmly, walk less, eliminate unnecessary work and do things first time right. As a result, you process orders faster with the same team, without having to work harder. Picqer helps you make the processes in your warehouse smarter and more efficient. With Picqer you work more calmly, walk less, eliminate unnecessary work and do things first time right. As a result, you process orders faster with the same team, without having to work harder. more Stock & Location Management Picklists & Smart Picking Routes Purchasing & Receiving Inventory Shipment & Returns Reports & Automations
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About Multi-store Apps for Shopify
Multi-store apps are essential tools for Shopify merchants looking to enhance their store's functionality and improve customer experience. These specialized applications help store owners streamline operations, increase sales, and provide better service to their customers.
When choosing a multi-store app for your Shopify store, consider factors such as features, pricing, customer support, and compatibility with your theme and other apps. Reading reviews from other merchants can also provide valuable insights into the app's performance and reliability.
The apps listed on this page represent some of the best multi-store solutions available in the Shopify App Store. Each has been selected based on its functionality, user ratings, and overall value for Shopify merchants.